- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x GLU- GLY- SER- ARG- ASN- GLN- ASP- TRP- LEU: nonameric peptide murine gp100(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 5 residues within 4Å:- Chain D: K.41, E.69, F.70, T.71, Y.78
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:T.71
- Salt bridges: D:K.41
SO4.3: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)SO4.4: 8 residues within 4Å:- Chain A: W.204, R.234, Q.242
- Chain B: S.11, H.13, P.14, P.15, R.97
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:S.11, A:R.234, A:Q.242
SO4.5: 2 residues within 4Å:- Chain B: K.3, T.4
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.4, B:T.4, B:T.4
SO4.6: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)SO4.7: 4 residues within 4Å:- Chain B: K.41, F.70, T.71, Y.78
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.71, B:Y.78
- Salt bridges: B:K.41
SO4.8: 5 residues within 4Å:- Chain B: T.73, D.76, W.95, R.97
- Chain C: L.251
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.74, B:R.97
- Salt bridges: B:R.97
SO4.11: 3 residues within 4Å:- Chain C: R.21
- Chain D: M.54
- Ligands: SO4.15
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:M.54
- Salt bridges: C:R.21
SO4.12: 1 residues within 4Å:- Chain C: Y.113
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.113
- Salt bridges: C:R.111
SO4.13: 2 residues within 4Å:- Chain D: K.3, T.4
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:T.4
SO4.14: 2 residues within 4Å:- Chain D: R.12, H.67
2 PLIP interactions:2 interactions with chain D- Salt bridges: D:R.12, D:H.67
SO4.15: 5 residues within 4Å:- Chain D: I.35, E.36, I.37, M.51
- Ligands: SO4.11
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:I.35, D:I.37
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 6 residues within 4Å:- Chain A: R.6, F.8, Y.27, N.30
- Chain B: F.56, K.58
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Water bridges: A:N.30
- Hydrogen bonds: B:F.56
GOL.16: 5 residues within 4Å:- Chain C: F.8, Y.27, N.30
- Chain D: F.56, Y.63
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:K.58, D:Y.63, C:Y.27
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
van Stipdonk, M.J. et al., Design of agonistic altered peptides for the robust induction of CTL directed towards H-2Db in complex with the melanoma-associated epitope gp100. Cancer Res. (2009)
- Release Date
- 2009-03-10
- Peptides
- H-2 class I histocompatibility antigen, D-B alpha chain: AC
Beta-2-microglobulin: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DC
JB
ED
K
SMTL ID : 3cch.5 (5 other biounits)
H-2Db complex with murine gp100
H-2 class I histocompatibility antigen, D-B alpha chain
Beta-2-microglobulin
Toggle Identical (BD)Related Entries With Identical Sequence
1bqh.1 | 1bqh.2 | 1cd1.1 | 1cd1.2 | 1fo0.1 | 1fzj.1 | 1fzj.2 | 1fzk.1 | 1fzk.2 | 1fzm.1 | 1fzo.1 | 1g6r.1 | 1g6r.2 | 1g7p.1 | 1g7q.1 | 1hoc.1 | 1inq.1 | 1juf.1 | 1k8d.1 | 1kbg.1 | 1kj2.1 | 1kj2.2 | 1kj3.1 | 1kj3.2 | 1kpu.1 | 1kpv.1 | 1kpv.2 | 1ld9.1 | 1ld9.2 | 1ldp.1 more...less...1leg.1 |
1lek.1 |
1lk2.1 |
1mhc.1 |
1mhc.2 |
1mhc.3 |
1mwa.1 |
1mwa.2 |
1n3n.1 |
1n3n.2 |
1n3n.3 |
1n3n.4 |
1n3n.5 |
1n3n.6 |
1n59.1 |
1n59.2 |
1n5a.1 |
1n5a.2 |
1n5a.3 |
1n5a.4 |
1nan.1 |
1nez.1 |
1osz.1 |
1p1z.1 |
1pqz.1 |
1qlf.1 |
1rk0.1 |
1rk1.1 |
1s7q.1 |
1s7r.1 |
1s7r.2 |
1s7s.1 |
1s7t.1 |
1s7t.2 |
1s7u.1 |
1s7u.2 |
1s7u.3 |
1s7u.4 |
1s7v.1 |
1s7v.2 |
1s7w.1 |
1s7w.2 |
1s7w.3 |
1s7w.4 |
1s7x.1 |
1s7x.2 |
1s7x.3 |
1s7x.4 |
1t0m.1 |
1t0m.2 |
1t0n.1 |
1t0n.2 |
1vac.1 |
1vad.1 |
1wbx.1 |
1wby.1 |
1wbz.1 |
1wbz.2 |
1zhb.1 |
1zhb.2 |
1zhb.3 |
1zhb.4 |
1zhn.1 |
2ckb.1 |
2ckb.2 |
2clv.1 |
2clv.2 |
2clz.1 |
2clz.2 |
2f74.1 |
2f74.2 |
2fo4.1 |
2mha.1 |
2mha.2 |
2vaa.1 |
2vab.1 |
2zsv.1 |
2zsv.2 |
2zsw.1 |
2zsw.2 |
2zsw.3 |
2zsw.4 |
3buy.1 |
3cc5.1 |
3cc5.2 |
3cch.1 |
3cch.2 |
3cch.3 |
3cch.4 |
3cch.6 |
3ch1.1 |
3ch1.2 |
3ch1.3 |
3ch1.4 |
3cpl.1 |
3cpl.2 |
3cvh.1 |
3cvh.2 |
3l3h.1 |
3p4m.1 |
3p4m.2 |
3p4n.1 |
3p4n.2 |
3p4o.1 |
3p4o.2 |
3p9l.1 |
3p9l.2 |
3p9m.1 |
3p9m.2 |
3pab.1 |
3pab.2 |
3pqy.1 |
3pqy.2 |
3pqy.3 |
3pqy.4 |
3pwu.1 |
3quk.1 |
3quk.2 |
3qul.1 |
3qul.2 |
3qul.3 |
3qul.4 |
3rol.1 |
3rol.2 |
3roo.1 |
3roo.2 |
3tbs.1 |
3tbs.2 |
3tbt.1 |
3tbt.2 |
3tbt.3 |
3tbt.4 |
3tbv.1 |
3tbv.2 |
3tbv.3 |
3tbv.4 |
3tbw.1 |
3tbw.2 |
3tbw.3 |
3tbw.4 |
3tby.1 |
3tby.2 |
3tby.3 |
3tby.4 |
4hs3.1 |
4iho.1 |
4iho.2 |
4l8d.1 |
4l8d.2 |
4nsk.1 |
4pv8.1 |
4pv8.2 |
4pv9.1 |
4pv9.2 |
4zus.1 |
4zut.1 |
4zuu.1 |
4zuv.1 |
4zuv.2 |
4zuw.1 |
5e8n.1 |
5e8n.2 |
5e8n.3 |
5e8n.4 |
5e8o.1 |
5e8o.2 |
5e8p.1 |
5e8p.2 |
5jwd.1 |
5jwe.1 |
5jwe.2 |
5jwe.3 |
5jwe.4 |
5m00.1 |
5m01.1 |
5m02.1 |
5mzm.1 |
5mzm.2 |
5til.1 |
5til.2 |
5tje.1 |
5tje.2 |
6g9q.1 |
6g9r.1 |
6g9r.2 |
6g9r.3 |
6g9r.4 |
6gb5.1 |
6gb5.2 |
6gb7.3 |
6h6d.1 |
6h6d.2 |
6h6h.1 |
6h6h.2 |
6i8c.1 |
6l9m.1 |
6l9m.2 |
6l9m.3 |
6l9m.4 |
6l9n.1 |
6l9n.2 |
6l9n.3 |
6l9n.4