SMTL ID : 5e8n.2 (3 other biounits)

The structure of the TEIPP associated Trh4 peptide in complex with H-2D(b)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MET- CYS- LEU- ARG- MET- THR- ALA- VAL- MET: Ceramide synthase 5(Non-covalent)

MET-CYS-LEU-ARG-MET-THR-ALA-VAL-MET.1: 26 residues within 4Å: Chain A: M.5, Y.7, Y.45, Y.59, E.63, K.66, Q.70, W.73, S.77, N.80, L.81, Y.84, Q.97, F.116, Y.123, T.143, K.146, W.147, S.150, A.152, H.155, Y.156, Y.159, E.163, W.167, Y.171 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:W.73, A:Y.156, A:Y.159, A:Y.159, A:W.167 Hydrogen bonds: A:E.63, A:K.66, A:Q.70, A:Q.70, A:S.77, A:N.80, A:Y.84, A:Y.156, A:Y.156, A:Y.171, A:Y.171 Water bridges: A:Y.7, A:E.9, A:Y.156, A:Y.156, A:Y.159, A:Y.159 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hafstrand, I. et al., The MHC Class I Cancer-Associated Neoepitope Trh4 Linked with Impaired Peptide Processing Induces a Unique Noncanonical TCR Conformer. J Immunol. (2016)

Release Date

2016-02-03

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

Related Entries With Identical Sequence