SMTL ID : 1zhb.2 (3 other biounits)

Crystal Structure Of The Murine Class I Major Histocompatibility Complex Of H-2Db, B2-Microglobulin, and a 9-Residue Peptide Derived from rat dopamine beta-monooxigenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- ALA- LEU- TYR- ASN- TYR- ALA- PRO- ILE: 9-mer peptide from Dopamine beta-monooxygenase(Non-covalent)

LYS-ALA-LEU-TYR-ASN-TYR-ALA-PRO-ILE.1: 27 residues within 4Å: Chain A: M.5, Y.7, Y.45, R.62, E.63, K.66, Q.70, W.73, F.74, S.77, N.80, L.81, Y.84, L.95, Q.97, S.99, Y.123, T.143, K.146, W.147, S.150, A.152, H.155, Y.156, Y.159, W.167, Y.171 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:Y.7, A:W.73, A:W.73, A:L.81, A:Y.84, A:L.95, A:Y.123, A:W.147, A:A.152, A:H.155, A:Y.156, A:Y.159, A:Y.159, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:E.63, A:E.63, A:Q.70, A:Q.70, A:S.77, A:N.80, A:Q.97, A:Q.97, A:K.146, A:Y.156, A:Y.159, A:Y.171 Water bridges: A:H.155 pi-Cation interactions: A:H.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sandalova, T. et al., A structural basis for CD8+ T cell-dependent recognition of non-homologous peptide ligands: implications for molecular mimicry in autoreactivity. J.Biol.Chem. (2005)

Release Date

2005-06-14

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

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