SMTL ID : 6h6h.2 (1 other biounit)

Crystal structures of the murine class I major histocompatibility complex H-2Dbm13 in complex with adenovirus-derived peptide Ad10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.6, F.8, Y.27, N.30 Chain B: K.58 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:R.6, A:Y.27 Salt bridges: B:K.58 SO4.2: 3 residues within 4Å: Chain A: P.20, R.75, R.79 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.75, A:R.79 SO4.3: 9 residues within 4Å: Chain A: W.204, R.234, Q.242 Chain B: Y.10, S.11, H.13, P.14, R.97, M.99 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.11, B:S.11, A:R.234, A:Q.242 SO4.4: 1 residues within 4Å: Chain B: R.81 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.81 SO4.5: 4 residues within 4Å: Chain A: G.237 Chain B: R.12, I.22, H.67 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.12, B:H.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abualrous, E.T. et al., Crystal structures of H-2Db and H-2Dbm13 with cancer-associated Ad 10 peptide reveal that subtle changes in the peptide environment impact thermostability and alloreactivity. to be published

Release Date

2019-08-14

Peptides

H-2D cell surface glycoprotein: A
Beta-2-microglobulin: B
SER-GLY-PRO-SER-ASN-THR-PRO-PRO-GLU-ILE: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

H-2D cell surface glycoprotein

Beta-2-microglobulin

SER-GLY-PRO-SER-ASN-THR-PRO-PRO-GLU-ILE

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