SMTL ID : 2zsw.3 (3 other biounits)

Crystal structure of H-2Kb in complex with the Q600Y variant of JHMV epitope S598

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- ABA- TYR- ILE- PHE- ALA- ASN- ILE: 8-mer peptide from spike glycoprotein(Non-covalent)

ARG-ABA-TYR-ILE-PHE-ALA-ASN-ILE.1: 27 residues within 4Å: Chain A: Y.7, E.24, R.62, E.63, K.66, N.70, S.73, F.74, V.76, D.77, T.80, L.81, Y.84, V.97, S.99, Q.114, Y.116, Y.123, T.143, W.147, E.152, R.155, L.156, Y.159, T.163, W.167, Y.171 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.7, A:K.66, A:F.74, A:D.77, A:L.81, A:V.97, A:Y.116, A:Y.123, A:T.143, A:W.147, A:L.156, A:Y.159, A:Y.159, A:Y.159, A:T.163 Hydrogen bonds: A:Y.7, A:Y.7, A:E.63, A:K.66, A:N.70, A:N.70, A:S.73, A:D.77, A:D.77, A:Y.116, A:E.152, A:R.155, A:R.155, A:Y.159, A:Y.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Butler, N.S. et al., Prevention of cytotoxic T cell escape using a heteroclitic subdominant viral T cell determinant. Plos Pathog. (2008)

Release Date

2008-11-04

Peptides

H-2 class I histocompatibility antigen, K-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

H-2 class I histocompatibility antigen, K-B alpha chain

Beta-2-microglobulin

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