SMTL ID : 1mhc.3 (2 other biounits)

MODEL OF MHC CLASS I H2-M3 WITH NONAPEPTIDE FROM RAT ND1 REFINED AT 2.3 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x FME- TYR- PHE- ILE- ASN- ILE- LEU- THR- LEU: NONAPEPTIDE FROM RAT NADH DEHYDROGENASE(Non-covalent)

FME-TYR-PHE-ILE-ASN-ILE-LEU-THR-LEU.1: 29 residues within 4Å: Chain A: Y.7, H.9, Y.22, S.24, C.36, L.63, K.66, V.67, I.70, S.73, A.74, A.76, N.77, T.80, L.81, Y.84, L.95, W.97, V.99, Y.114, A.116, Y.123, V.139, T.143, R.146, L.147, T.152, F.156, Y.159 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Y.84, A:Y.84, A:L.95, A:L.95, A:Y.114, A:Y.114, A:A.116, A:Y.123, A:V.139, A:R.146, A:T.152 Hydrogen bonds: A:N.77, A:N.77, A:T.80, A:Y.84, A:Y.84, A:Y.114, A:Y.114, A:T.143, A:Y.159 pi-Stacking: A:W.97, A:Y.159 FME-TYR-PHE-ILE-ASN-ILE-LEU-THR-LEU.3: 25 residues within 4Å: Chain C: Y.7, H.9, Y.22, S.24, L.63, K.66, V.67, I.70, S.73, N.77, T.80, Y.84, W.97, V.99, Y.114, Y.123, W.133, I.142, T.143, R.146, L.147, T.152, Y.155, F.156, Y.159 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:I.70, C:T.80, C:Y.84, C:Y.84, C:W.97, C:W.97, C:Y.114, C:Y.123, C:W.133, C:I.142, C:L.147, C:F.156, C:Y.159 Hydrogen bonds: C:K.66, C:N.77, C:N.77, C:Y.114, C:R.146, C:Y.159, C:Y.159 Water bridges: C:Y.114

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: Y.84, N.86, V.139 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C.R. et al., Nonclassical binding of formylated peptide in crystal structure of the MHC class Ib molecule H2-M3. Cell(Cambridge,Mass.) (1995)

Release Date

1996-01-29

Peptides

MHC CLASS I ANTIGEN H2-M3: AC
MHC CLASS I ANTIGEN H2-M3: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C
A

B
E

D
B

MHC CLASS I ANTIGEN H2-M3

MHC CLASS I ANTIGEN H2-M3

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