SMTL ID : 1tzy.1

Crystal Structure of the Core-Histone Octamer to 1.90 Angstrom Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.30, R.33, K.37 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.33, A:K.37, A:K.37, A:K.37 Salt bridges: A:R.30, A:R.33, A:K.37 PO4.6: 4 residues within 4Å: Chain A: I.80, P.81 Chain B: S.56, K.58 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.56, B:K.58 Water bridges: B:K.58 Salt bridges: B:K.58 PO4.9: 3 residues within 4Å: Chain C: R.50, E.51, R.54 2 PLIP interactions: 2 interactions with chain C Water bridges: C:Y.55 Salt bridges: C:R.54 PO4.16: 3 residues within 4Å: Chain E: R.30, R.33, K.37 3 PLIP interactions: 3 interactions with chain E Salt bridges: E:R.30, E:R.33, E:K.37 PO4.17: 4 residues within 4Å: Chain E: R.78 Chain F: S.56, S.57, K.58 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain F Salt bridges: E:R.78 Hydrogen bonds: F:S.57, F:K.58

23 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.33, R.36 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: A.70, L.86, N.90 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: N.111, I.112 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.30, R.33 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain A: G.45, A.46, G.47, A.48 Chain B: T.91, S.92 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: K.35, S.65 Chain H: G.102 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain C: M.121, P.122, K.123 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain C: R.117, V.118, T.119 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain C: Q.126, R.129 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain D: R.40, R.46, I.47 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain C: R.64 Chain D: T.31, P.33 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain C: A.96 Chain D: R.96 Chain E: T.102 Ligand excluded by PLIP CL.18: 6 residues within 4Å: Chain E: G.45, A.46, G.47, A.48 Chain F: T.91, S.92 Ligand excluded by PLIP CL.19: 4 residues within 4Å: Chain E: R.18, S.19, V.28, G.29 Ligand excluded by PLIP CL.20: 1 residues within 4Å: Chain F: K.117 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain D: G.102 Chain F: K.35, S.65 Ligand excluded by PLIP CL.22: 4 residues within 4Å: Chain A: Q.105 Chain G: E.60, L.61, K.65 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain G: M.121, P.122, K.123 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain G: R.117, V.118, T.119 Ligand excluded by PLIP CL.25: 3 residues within 4Å: Chain G: Q.69, R.70, R.73 Ligand excluded by PLIP CL.26: 3 residues within 4Å: Chain A: T.102 Chain G: A.96 Chain H: R.96 Ligand excluded by PLIP CL.27: 4 residues within 4Å: Chain H: R.36, R.40, R.46, I.47 Ligand excluded by PLIP CL.28: 3 residues within 4Å: Chain H: T.31, K.32, R.56 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wood, C.M. et al., High-resolution structure of the native histone octamer. Acta Crystallogr.,Sect.F (2005)

Release Date

2004-08-03

Peptides

Histone H2A-IV: AE
Histone H2B: BF
HISTONE H3: CG
HISTONE H4-VI: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Histone H2A-IV

Histone H2B

HISTONE H3

HISTONE H4-VI

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