SMTL ID : 3daw.1

Structure of the actin-depolymerizing factor homology domain in complex with actin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-functional Binders)

CA.1: 1 residues within 4Å: Ligands: ATP.2 No protein-ligand interaction detected (PLIP)

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 21 residues within 4Å: Chain A: G.15, S.16, G.17, L.18, K.20, G.158, D.159, G.160, V.161, G.184, R.185, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: CA.1 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.16, A:G.17, A:L.18, A:G.76, A:G.158, A:D.159, A:D.159, A:D.159, A:G.160, A:V.161, A:K.215, A:E.216, A:G.304, A:K.338 Water bridges: A:N.14, A:K.20, A:K.20, A:D.159, A:G.184 Salt bridges: A:K.20, A:K.20 pi-Stacking: A:Y.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Paavilainen, V.O. et al., Structure of the actin-depolymerizing factor homology domain in complex with actin. J.Cell Biol. (2008)

Release Date

2008-07-29

Peptides

Actin, alpha skeletal muscle: A
Twinfilin-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Actin, alpha skeletal muscle

Twinfilin-1

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