SMTL ID : 3j8i.1

Near-Atomic Resolution for One State of F-Actin

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: D.13, G.15, S.16, G.17, L.18, S.157, G.158, D.159, G.184, R.185, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308 Ligands: MG.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.16, A:S.16, A:G.17, A:L.18, A:D.159, A:R.212, A:K.215, A:E.216, A:G.304, A:T.305 ADP.3: 19 residues within 4Å: Chain B: D.13, G.15, S.16, G.17, L.18, S.157, G.158, D.159, G.184, R.185, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308 Ligands: MG.4 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.16, B:S.16, B:G.17, B:L.18, B:D.159, B:R.212, B:K.215, B:E.216, B:G.304, B:T.305 ADP.5: 19 residues within 4Å: Chain C: D.13, G.15, S.16, G.17, L.18, S.157, G.158, D.159, G.184, R.185, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308 Ligands: MG.6 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:S.16, C:S.16, C:G.17, C:L.18, C:D.159, C:R.212, C:K.215, C:E.216, C:G.304, C:T.305 ADP.7: 19 residues within 4Å: Chain D: D.13, G.15, S.16, G.17, L.18, S.157, G.158, D.159, G.184, R.185, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308 Ligands: MG.8 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:S.16, D:S.16, D:G.17, D:L.18, D:D.159, D:R.212, D:K.215, D:E.216, D:G.304, D:T.305 ADP.9: 19 residues within 4Å: Chain E: D.13, G.15, S.16, G.17, L.18, S.157, G.158, D.159, G.184, R.185, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308 Ligands: MG.10 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:S.16, E:S.16, E:G.17, E:L.18, E:D.159, E:R.212, E:K.215, E:E.216, E:G.304, E:T.305

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: Q.139, D.156, V.341 Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.4: 4 residues within 4Å: Chain B: Q.139, D.156, V.341 Ligands: ADP.3 No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain C: Q.139, D.156, V.341 Ligands: ADP.5 No protein-ligand interaction detected (PLIP) MG.8: 4 residues within 4Å: Chain D: Q.139, D.156, V.341 Ligands: ADP.7 No protein-ligand interaction detected (PLIP) MG.10: 4 residues within 4Å: Chain E: Q.139, D.156, V.341 Ligands: ADP.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Galkin, V.E. et al., Near-atomic resolution for one state of f-actin. Structure (2015)

Release Date

2015-01-14

Peptides

Actin, alpha skeletal muscle: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

D
G

E
H

Actin, alpha skeletal muscle

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