SMTL ID : 6jcu.1 (1 other biounit)

Crystal structure of an actin monomer in complex with a nucleator Cordon-Bleu WH2-motif peptide mutant. T22V, H11R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: G.15, S.16, G.17, L.18, K.20, G.76, G.158, D.159, G.160, V.161, G.184, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: CA.2 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:S.16, A:G.17, A:L.18, A:L.18, A:G.158, A:D.159, A:D.159, A:G.160, A:V.161, A:V.161, A:K.215, A:E.216, A:G.304, A:T.305, A:K.338 Water bridges: A:K.20, A:K.20, A:K.20, A:Q.139, A:Q.139, A:D.159, A:T.188, A:Y.308 Salt bridges: A:K.20, A:K.20 pi-Stacking: A:Y.308

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: Q.139 Ligands: ATP.1 No protein-ligand interaction detected (PLIP) CA.3: 2 residues within 4Å: Chain A: T.68, K.70 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.68, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scipion, C.P.M. et al., Design of an actin-severing peptide. To Be Published

Release Date

2020-02-05

Peptides

Actin, alpha skeletal muscle: A
Peptide from Protein cordon-bleu: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Actin, alpha skeletal muscle

Peptide from Protein cordon-bleu

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