SMTL ID : 6avb.1

CryoEM structure of Mical Oxidized Actin (Class 1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: D.13, G.15, S.16, G.17, L.18, K.20, D.156, G.158, D.159, G.160, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.13, A:L.18, A:D.159, A:D.159, A:G.160, A:K.215 Salt bridges: A:K.20, A:K.20 pi-Stacking: A:Y.308 ADP.2: 19 residues within 4Å: Chain B: D.13, G.15, S.16, G.17, L.18, K.20, D.156, G.158, D.159, G.160, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:D.13, B:L.18, B:D.159, B:D.159, B:G.160, B:K.215 Salt bridges: B:K.20, B:K.20 pi-Stacking: B:Y.308 ADP.3: 19 residues within 4Å: Chain C: D.13, G.15, S.16, G.17, L.18, K.20, D.156, G.158, D.159, G.160, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:D.13, C:L.18, C:D.159, C:D.159, C:G.160, C:K.215 Salt bridges: C:K.20, C:K.20 pi-Stacking: C:Y.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grintsevich, E.E. et al., Catastrophic disassembly of actin filaments via Mical-mediated oxidation. Nat Commun (2017)

Release Date

2018-01-17

Peptides

Actin, alpha skeletal muscle: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

C
B

Actin, alpha skeletal muscle

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