SMTL ID : 6mgo.1

Structure of rabbit actin in complex with Mycalolide B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x JQV: Mycalolide B(Non-covalent)

JQV.1: 22 residues within 4Å: Chain A: G.25, D.26, D.27, Y.135, V.141, Y.145, A.146, S.147, G.148, R.149, T.150, G.170, Y.171, E.336, I.343, S.346, I.347, L.348, S.350, L.351, T.353, M.357 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.145, A:Y.145, A:I.343, A:I.347, A:I.347, A:L.351 Hydrogen bonds: A:Y.145, A:T.353

1 x CA: CALCIUM ION(Non-functional Binders)

CA.2: 1 residues within 4Å: Ligands: ADP.3 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 19 residues within 4Å: Chain A: G.15, S.16, G.17, L.18, K.20, G.158, D.159, G.184, R.185, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: CA.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.16, A:G.17, A:L.18, A:D.159, A:D.159, A:D.159, A:K.215, A:E.216, A:E.216, A:G.304, A:T.305 Water bridges: A:K.20, A:K.20, A:K.20, A:D.159, A:G.184 Salt bridges: A:K.20, A:K.20 pi-Stacking: A:Y.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pipaliya, B.V. et al., Truncated Actin-Targeting Macrolide Derivative Blocks Cancer Cell Motility and Invasion of Extracellular Matrix. J.Am.Chem.Soc. (2021)

Release Date

2018-11-21

Peptides

Actin, alpha skeletal muscle: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Actin, alpha skeletal muscle

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