SMTL ID : 6vao.1

Human cofilin-1 decorated actin filament

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-mer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: Q.139, D.156, V.341 Ligands: ADP.2 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain C: Q.139, D.156, V.341 Ligands: ADP.4 No protein-ligand interaction detected (PLIP) MG.5: 4 residues within 4Å: Chain E: Q.139, D.156, V.341 Ligands: ADP.6 No protein-ligand interaction detected (PLIP) MG.7: 4 residues within 4Å: Chain G: Q.139, D.156, V.341 Ligands: ADP.8 No protein-ligand interaction detected (PLIP) MG.9: 4 residues within 4Å: Chain I: Q.139, D.156, V.341 Ligands: ADP.10 No protein-ligand interaction detected (PLIP)

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 18 residues within 4Å: Chain A: D.13, G.15, S.16, G.17, L.18, K.20, D.156, G.158, D.159, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:D.13, A:S.16, A:G.17, A:L.18, A:D.159, A:D.159, A:K.215, A:E.216, A:E.216, A:G.304, A:T.305 Salt bridges: A:K.20, A:K.20 ADP.4: 18 residues within 4Å: Chain C: D.13, G.15, S.16, G.17, L.18, K.20, D.156, G.158, D.159, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.3 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:D.13, C:S.16, C:G.17, C:L.18, C:D.159, C:D.159, C:K.215, C:E.216, C:E.216, C:G.304, C:T.305 Salt bridges: C:K.20, C:K.20 ADP.6: 18 residues within 4Å: Chain E: D.13, G.15, S.16, G.17, L.18, K.20, D.156, G.158, D.159, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.5 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:D.13, E:S.16, E:G.17, E:L.18, E:D.159, E:D.159, E:K.215, E:E.216, E:E.216, E:G.304, E:T.305 Salt bridges: E:K.20, E:K.20 ADP.8: 18 residues within 4Å: Chain G: D.13, G.15, S.16, G.17, L.18, K.20, D.156, G.158, D.159, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.7 13 PLIP interactions: 13 interactions with chain G Hydrogen bonds: G:D.13, G:S.16, G:G.17, G:L.18, G:D.159, G:D.159, G:K.215, G:E.216, G:E.216, G:G.304, G:T.305 Salt bridges: G:K.20, G:K.20 ADP.10: 18 residues within 4Å: Chain I: D.13, G.15, S.16, G.17, L.18, K.20, D.156, G.158, D.159, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.9 13 PLIP interactions: 13 interactions with chain I Hydrogen bonds: I:D.13, I:S.16, I:G.17, I:L.18, I:D.159, I:D.159, I:K.215, I:E.216, I:E.216, I:G.304, I:T.305 Salt bridges: I:K.20, I:K.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huehn, A.R. et al., Structures of cofilin-induced structural changes reveal local and asymmetric perturbations of actin filaments. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-01-08

Peptides

Actin, alpha skeletal muscle: ACEGI
Cofilin-1: BDFHJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C
A

E
B

G
C

I
E

B
J

D
F

F
G

H
H

J
I

Actin, alpha skeletal muscle

Cofilin-1

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