SMTL ID : 6jh9.1

Crystal structure of an actin monomer in complex with a chimeric peptide of Cordon-Bleu WH2 mutant and MIM. Lys18Arg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 22 residues within 4Å: Chain A: G.15, S.16, G.17, L.18, K.20, G.76, G.158, D.159, G.160, V.161, G.184, R.185, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: CA.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.16, A:G.17, A:L.18, A:L.18, A:G.158, A:D.159, A:D.159, A:G.160, A:V.161, A:K.215, A:E.216, A:E.216, A:G.304, A:T.305, A:K.338 Water bridges: A:K.20, A:D.159, A:G.184, A:K.338 Salt bridges: A:K.20, A:K.20 pi-Stacking: A:Y.308

2 x CA: CALCIUM ION(Non-functional Binders)(Non-covalent)

CA.2: 1 residues within 4Å: Ligands: ATP.1 No protein-ligand interaction detected (PLIP) CA.3: 2 residues within 4Å: Chain A: Q.265, S.267 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.267, H2O.3, H2O.5, H2O.10, H2O.11

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: E.226, N.227 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.226 Water bridges: A:E.226, A:N.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scipion, C.P.M. et al., Design of an actin-severing peptide. To Be Published

Release Date

2020-02-19

Peptides

Actin, alpha skeletal muscle: A
Cordon-Bleu MIM chimeric peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Actin, alpha skeletal muscle

Cordon-Bleu MIM chimeric peptide

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