SMTL ID : 6vau.1

Bare actin filament from a partially cofilin-decorated sample

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: Q.139 Ligands: ADP.2 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain B: Q.139 Ligands: ADP.4 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain C: Q.139 Ligands: ADP.6 No protein-ligand interaction detected (PLIP) MG.7: 2 residues within 4Å: Chain D: Q.139 Ligands: ADP.8 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain E: Q.139 Ligands: ADP.10 No protein-ligand interaction detected (PLIP)

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 17 residues within 4Å: Chain A: D.13, G.15, S.16, G.17, L.18, K.20, G.158, D.159, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.16, A:G.17, A:L.18, A:D.159, A:D.159, A:K.215, A:E.216, A:G.304, A:T.305, A:K.338, A:K.338, A:K.338 Salt bridges: A:K.20, A:K.20 ADP.4: 17 residues within 4Å: Chain B: D.13, G.15, S.16, G.17, L.18, K.20, G.158, D.159, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.3 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:S.16, B:G.17, B:L.18, B:D.159, B:D.159, B:K.215, B:E.216, B:G.304, B:T.305, B:K.338, B:K.338, B:K.338 Salt bridges: B:K.20, B:K.20 ADP.6: 17 residues within 4Å: Chain C: D.13, G.15, S.16, G.17, L.18, K.20, G.158, D.159, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.5 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:S.16, C:G.17, C:L.18, C:D.159, C:D.159, C:K.215, C:E.216, C:G.304, C:T.305, C:K.338, C:K.338, C:K.338 Salt bridges: C:K.20, C:K.20 ADP.8: 17 residues within 4Å: Chain D: D.13, G.15, S.16, G.17, L.18, K.20, G.158, D.159, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.7 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:S.16, D:G.17, D:L.18, D:D.159, D:D.159, D:K.215, D:E.216, D:G.304, D:T.305, D:K.338, D:K.338, D:K.338 Salt bridges: D:K.20, D:K.20 ADP.10: 17 residues within 4Å: Chain E: D.13, G.15, S.16, G.17, L.18, K.20, G.158, D.159, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.9 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:S.16, E:G.17, E:L.18, E:D.159, E:D.159, E:K.215, E:E.216, E:G.304, E:T.305, E:K.338, E:K.338, E:K.338 Salt bridges: E:K.20, E:K.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huehn, A.R. et al., Structures of cofilin-induced structural changes reveal local and asymmetric perturbations of actin filaments. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-01-01

Peptides

Actin, alpha skeletal muscle: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

E
E

Actin, alpha skeletal muscle

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