SMTL ID : 5yee.1

Crystal structure of LokiProfilin1/Rabbit Actin Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LAB: LATRUNCULIN B(Non-covalent)

LAB.1: 15 residues within 4Å: Chain A: G.17, L.18, P.34, I.36, Q.61, Y.71, D.159, G.184, R.185, T.188, R.208, E.209, R.212, K.215 Ligands: ATP.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.34, A:I.36, A:Y.71, A:E.209 Hydrogen bonds: A:Y.71, A:D.159, A:T.188, A:R.212, A:K.215 Salt bridges: A:R.212

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 23 residues within 4Å: Chain A: G.15, S.16, G.17, L.18, K.20, G.76, G.158, D.159, G.160, V.161, G.184, R.185, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: LAB.1, MG.3 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:S.16, A:G.17, A:L.18, A:G.158, A:D.159, A:D.159, A:D.159, A:G.160, A:V.161, A:V.161, A:K.215, A:E.216, A:E.216, A:G.304, A:T.305, A:K.338 Water bridges: A:K.20 Salt bridges: A:K.20, A:K.20 pi-Stacking: A:Y.308

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 1 residues within 4Å: Ligands: ATP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akil, C. et al., Genomes of Asgard archaea encode profilins that regulate actin. Nature (2018)

Release Date

2018-09-19

Peptides

Actin, alpha skeletal muscle: A
Uncharacterized protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Actin, alpha skeletal muscle

Uncharacterized protein

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