SMTL ID : 6bih.1 (1 other biounit)

The Structure of the Actin-Smooth Muscle Myosin Motor Domain Complex in the Rigor State

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-7-7-mer

Ligands

7 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain B: G.15, G.17, L.18, K.20, G.158, D.159, G.160, K.215, E.216, K.217, G.303, G.304, M.307, Y.308, K.338 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.17, B:L.18, B:D.159, B:D.159, B:G.160, B:K.217, B:K.338 Salt bridges: B:K.20, B:K.20 ADP.3: 15 residues within 4Å: Chain D: G.15, G.17, L.18, K.20, G.158, D.159, G.160, K.215, E.216, K.217, G.303, G.304, M.307, Y.308, K.338 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:G.17, D:L.18, D:D.159, D:D.159, D:G.160, D:K.217, D:K.338 Salt bridges: D:K.20, D:K.20 ADP.5: 15 residues within 4Å: Chain F: G.15, G.17, L.18, K.20, G.158, D.159, G.160, K.215, E.216, K.217, G.303, G.304, M.307, Y.308, K.338 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:G.17, F:L.18, F:D.159, F:D.159, F:G.160, F:K.217, F:K.338 Salt bridges: F:K.20, F:K.20 ADP.7: 15 residues within 4Å: Chain H: G.15, G.17, L.18, K.20, G.158, D.159, G.160, K.215, E.216, K.217, G.303, G.304, M.307, Y.308, K.338 9 PLIP interactions: 9 interactions with chain H Hydrogen bonds: H:G.17, H:L.18, H:D.159, H:D.159, H:G.160, H:K.217, H:K.338 Salt bridges: H:K.20, H:K.20 ADP.9: 15 residues within 4Å: Chain J: G.15, G.17, L.18, K.20, G.158, D.159, G.160, K.215, E.216, K.217, G.303, G.304, M.307, Y.308, K.338 9 PLIP interactions: 9 interactions with chain J Hydrogen bonds: J:G.17, J:L.18, J:D.159, J:D.159, J:G.160, J:K.217, J:K.338 Salt bridges: J:K.20, J:K.20 ADP.11: 15 residues within 4Å: Chain L: G.15, G.17, L.18, K.20, G.158, D.159, G.160, K.215, E.216, K.217, G.303, G.304, M.307, Y.308, K.338 9 PLIP interactions: 9 interactions with chain L Hydrogen bonds: L:G.17, L:L.18, L:D.159, L:D.159, L:G.160, L:K.217, L:K.338 Salt bridges: L:K.20, L:K.20 ADP.13: 15 residues within 4Å: Chain N: G.15, G.17, L.18, K.20, G.158, D.159, G.160, K.215, E.216, K.217, G.303, G.304, M.307, Y.308, K.338 9 PLIP interactions: 9 interactions with chain N Hydrogen bonds: N:G.17, N:L.18, N:D.159, N:D.159, N:G.160, N:K.217, N:K.338 Salt bridges: N:K.20, N:K.20

7 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 7 residues within 4Å: Chain B: S.143, D.156, S.302, G.303, R.337, S.340, V.341 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.156, B:S.302, B:S.340 MG.4: 7 residues within 4Å: Chain D: S.143, D.156, S.302, G.303, R.337, S.340, V.341 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.156, D:S.302, D:S.340 MG.6: 7 residues within 4Å: Chain F: S.143, D.156, S.302, G.303, R.337, S.340, V.341 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:D.156, F:S.302, F:S.340 MG.8: 7 residues within 4Å: Chain H: S.143, D.156, S.302, G.303, R.337, S.340, V.341 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:D.156, H:S.302, H:S.340 MG.10: 7 residues within 4Å: Chain J: S.143, D.156, S.302, G.303, R.337, S.340, V.341 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:D.156, J:S.302, J:S.340 MG.12: 7 residues within 4Å: Chain L: S.143, D.156, S.302, G.303, R.337, S.340, V.341 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:D.156, L:S.302, L:S.340 MG.14: 7 residues within 4Å: Chain N: S.143, D.156, S.302, G.303, R.337, S.340, V.341 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:D.156, N:S.302, N:S.340

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banerjee, C. et al., The structure of the actin-smooth muscle myosin motor domain complex in the rigor state. J. Struct. Biol. (2017)

Release Date

2018-09-19

Peptides

Myosin-11: ACEGIKM
Actin, alpha skeletal muscle: BDFHJLN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
H

E
H

G
H

I
H

K
H

M
H

B
C

D
C

F
C

H
C

J
C

L
C

N
C

Myosin-11

Actin, alpha skeletal muscle

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