SMTL ID : 6m5g.1

F-actin-Utrophin complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-3-mer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: Q.139 Ligands: ADP.2 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain B: G.303 Ligands: ADP.4 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain C: D.156, G.303 Ligands: ADP.6 No protein-ligand interaction detected (PLIP) MG.7: 3 residues within 4Å: Chain D: D.156, G.303 Ligands: ADP.8 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain E: D.156 Ligands: ADP.10 No protein-ligand interaction detected (PLIP)

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 16 residues within 4Å: Chain A: G.15, S.16, G.17, L.18, K.20, G.158, D.159, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.16, A:G.17, A:L.18, A:D.159, A:K.215, A:G.304, A:M.307 Salt bridges: A:K.20, A:K.20 pi-Stacking: A:Y.308 ADP.4: 17 residues within 4Å: Chain B: G.15, S.16, G.17, L.18, K.20, S.157, G.158, D.159, G.184, K.215, E.216, G.303, G.304, T.305, M.307, Y.308 Ligands: MG.3 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.16, B:S.16, B:G.17, B:L.18, B:D.159, B:K.215, B:G.304, B:M.307 Salt bridges: B:K.20, B:K.20 pi-Stacking: B:Y.308 ADP.6: 17 residues within 4Å: Chain C: G.15, S.16, G.17, L.18, K.20, G.158, D.159, G.184, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.5 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.16, C:G.17, C:L.18, C:D.159, C:D.159, C:K.215, C:G.304, C:T.305 Salt bridges: C:K.20, C:K.20 pi-Stacking: C:Y.308 ADP.8: 15 residues within 4Å: Chain D: G.15, S.16, G.17, L.18, K.20, G.158, D.159, G.184, E.216, G.303, G.304, T.305, Y.308, K.338 Ligands: MG.7 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:S.16, D:G.17, D:L.18, D:L.18, D:D.159, D:D.159, D:G.304 Salt bridges: D:K.20, D:K.20 ADP.10: 14 residues within 4Å: Chain E: D.13, G.15, S.16, G.17, L.18, K.20, G.158, D.159, G.184, E.216, G.304, T.305, Y.308 Ligands: MG.9 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:S.16, E:G.17, E:L.18, E:D.159, E:D.159, E:G.304 Salt bridges: E:K.20, E:K.20 pi-Stacking: E:Y.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumari, A. et al., Structural insights into actin filament recognition by commonly used cellular actin markers. Embo J. (2020)

Release Date

2020-05-20

Peptides

Actin, alpha skeletal muscle: ABCDE
Utrophin: FGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Actin, alpha skeletal muscle

Utrophin

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