SMTL ID : 2vyp.1 (1 other biounit)

Rabbit-muscle G-actin in complex with myxobacterial rhizopodin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 22 residues within 4Å: Chain A: G.15, S.16, G.17, L.18, K.20, G.76, G.158, D.159, G.160, V.161, G.184, R.185, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: CA.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.16, A:S.16, A:G.17, A:L.18, A:L.18, A:G.158, A:D.159, A:D.159, A:D.159, A:G.160, A:V.161, A:K.215, A:E.216, A:E.216, A:G.304, A:T.305, A:K.338 Water bridges: A:K.20 Salt bridges: A:K.20, A:K.20 pi-Stacking: A:Y.308

1 x CA: CALCIUM ION(Non-functional Binders)

CA.2: 1 residues within 4Å: Ligands: ATP.1 No protein-ligand interaction detected (PLIP)

1 x RH9: RHIZOPODIN

RH9.3: 15 residues within 4Å: Chain A: Y.135, Y.145, A.146, S.147, G.148, R.149, T.150, G.170, Y.171, I.347, L.348, L.351, T.353, M.357 Ligands: HEZ.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.145, A:Y.145, A:Y.145, A:I.347, A:I.347, A:L.351, A:L.351 Hydrogen bonds: A:Y.145

3 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.4: 3 residues within 4Å: Chain A: L.351, T.353 Ligands: RH9.3 No protein-ligand interaction detected (PLIP) HEZ.5: 6 residues within 4Å: Chain A: D.26, D.27, A.28, P.29, R.30 Ligands: HEZ.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.26, A:A.28 Hydrogen bonds: A:D.27 HEZ.6: 6 residues within 4Å: Chain A: A.28, P.29, R.30, V.32, Y.339 Ligands: HEZ.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.28 Hydrogen bonds: A:V.32 Water bridges: A:V.32, A:V.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hagelueken, G. et al., The Absolute Configuration of Rhizopodin and its Inhibition of Actin Polymerization by Dimerization. Angew.Chem.Int.Ed.Engl. (2009)

Release Date

2009-02-24

Peptides

ACTIN, ALPHA SKELETAL MUSCLE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ACTIN, ALPHA SKELETAL MUSCLE

Related Entries With Identical Sequence