- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.1: 1 residues within 4Å:- Chain A: D.77
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.77
MN.6: 1 residues within 4Å:- Chain D: V.45
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:V.45
- 40 x PT: PLATINUM (II) ION(Non-covalent)(Non-functional Binders)
PT.2: 2 residues within 4Å:- Chain A: M.120
- Chain I: G.71
Ligand excluded by PLIPPT.3: 3 residues within 4Å:- Chain B: M.84, Y.88
- Ligands: PT.4
Ligand excluded by PLIPPT.4: 4 residues within 4Å:- Chain B: M.84, G.101, G.102
- Ligands: PT.3
Ligand excluded by PLIPPT.8: 3 residues within 4Å:- Chain E: M.120
- Chain J: G.71, A.72
Ligand excluded by PLIPPT.9: 2 residues within 4Å:- Chain F: M.84, Y.88
Ligand excluded by PLIPPT.11: 1 residues within 4Å:- Chain I: A.1
Ligand excluded by PLIPPT.12: 2 residues within 4Å:- Chain I: G.144, A.145
Ligand excluded by PLIPPT.13: 2 residues within 4Å:- Chain I: C.19, G.20
Ligand excluded by PLIPPT.14: 2 residues within 4Å:- Chain I: G.58, G.59
Ligand excluded by PLIPPT.15: 1 residues within 4Å:- Chain I: A.27
Ligand excluded by PLIPPT.16: 2 residues within 4Å:- Chain I: A.56, G.57
Ligand excluded by PLIPPT.17: 2 residues within 4Å:- Chain I: G.98
- Ligands: PT.27
Ligand excluded by PLIPPT.18: 2 residues within 4Å:- Chain I: T.17, G.18
Ligand excluded by PLIPPT.19: 2 residues within 4Å:- Chain I: G.141, G.142
Ligand excluded by PLIPPT.20: 2 residues within 4Å:- Chain I: T.106, G.107
Ligand excluded by PLIPPT.21: 3 residues within 4Å:- Chain I: G.57, G.58, G.59
Ligand excluded by PLIPPT.22: 2 residues within 4Å:- Chain I: T.70, G.71
Ligand excluded by PLIPPT.23: 2 residues within 4Å:- Chain I: G.94, A.95
Ligand excluded by PLIPPT.24: 2 residues within 4Å:- Chain I: T.45, G.46
Ligand excluded by PLIPPT.25: 1 residues within 4Å:- Chain I: G.78
Ligand excluded by PLIPPT.26: 2 residues within 4Å:- Chain I: A.27, G.28
Ligand excluded by PLIPPT.27: 3 residues within 4Å:- Chain I: G.98
- Chain J: C.49
- Ligands: PT.17
Ligand excluded by PLIPPT.28: 3 residues within 4Å:- Chain I: T.37, G.38
- Chain J: C.109
Ligand excluded by PLIPPT.29: 2 residues within 4Å:- Chain J: G.71, A.72
Ligand excluded by PLIPPT.30: 1 residues within 4Å:- Chain J: A.1
Ligand excluded by PLIPPT.31: 2 residues within 4Å:- Chain J: A.27, G.28
Ligand excluded by PLIPPT.32: 1 residues within 4Å:- Chain J: G.81
Ligand excluded by PLIPPT.33: 2 residues within 4Å:- Chain J: G.141, G.142
Ligand excluded by PLIPPT.34: 2 residues within 4Å:- Chain J: G.20, G.21
Ligand excluded by PLIPPT.35: 2 residues within 4Å:- Chain J: G.98, C.99
Ligand excluded by PLIPPT.36: 2 residues within 4Å:- Chain J: G.57, G.58
Ligand excluded by PLIPPT.37: 1 residues within 4Å:- Chain J: G.57
Ligand excluded by PLIPPT.38: 2 residues within 4Å:- Chain J: A.77, G.78
Ligand excluded by PLIPPT.39: 1 residues within 4Å:- Chain J: G.59
Ligand excluded by PLIPPT.40: 1 residues within 4Å:- Chain J: G.144
Ligand excluded by PLIPPT.41: 2 residues within 4Å:- Chain J: G.46, C.47
Ligand excluded by PLIPPT.42: 2 residues within 4Å:- Chain J: G.132, G.133
Ligand excluded by PLIPPT.43: 2 residues within 4Å:- Chain J: C.19, G.20
Ligand excluded by PLIPPT.44: 2 residues within 4Å:- Chain J: G.34, T.35
Ligand excluded by PLIPPT.45: 2 residues within 4Å:- Chain J: T.37, G.38
Ligand excluded by PLIP- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 6 residues within 4Å:- Chain C: G.44, A.45, G.46, A.47
- Chain D: T.87, S.88
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:S.88, C:G.46, C:A.47
SO4.7: 5 residues within 4Å:- Chain C: R.71
- Chain D: H.46, P.47, D.48, T.49
6 PLIP interactions:1 interactions with chain C, 5 interactions with chain D- Salt bridges: C:R.71, D:H.46
- Hydrogen bonds: D:D.48, D:T.49, D:T.49, D:T.49
SO4.10: 7 residues within 4Å:- Chain G: G.44, A.45, G.46, A.47
- Chain H: T.87, S.88
- Chain I: C.111
4 PLIP interactions:3 interactions with chain G, 1 interactions with chain H- Hydrogen bonds: G:G.44, G:G.46, G:A.47, H:S.88
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wu, B. et al., Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res. (2011)
- Release Date
- 2012-03-14
- Peptides
- Histone H3.2: AE
Histone H4: BF
Histone H2A type1: CG
Histone H2B 1.1: DH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
EB
BF
FC
CG
GD
DH
H
SMTL ID : 3rek.1
2.6 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Oxaliplatin
Histone H3.2
Histone H4
Histone H2A type1
Histone H2B 1.1
Related Entries With Identical Sequence
1kx3.1 | 1kx4.1 | 1kx5.1 | 1m18.1 | 1m19.1 | 1m1a.1 | 1p34.1 | 1p3a.1 | 1p3k.1 | 1p3l.1 | 1p3m.1 | 1s32.1 | 1zbb.1 | 1zla.1 | 2fj7.1 | 2io5.1 | 2nzd.1 | 3b6f.1 | 3b6g.1 | 3c1b.1 | 3c1c.1 | 3c9k.1 | 3c9k.2 | 3kuy.1 | 3kxb.1 | 3lel.1 | 3lel.2 | 3lja.1 | 3lz0.1 | 3lz1.1 more...less...3mgp.1 | 3mgq.1 | 3mgr.1 | 3mgs.1 | 3mnn.1 | 3mvd.1 | 3o62.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 3ut9.1 | 3uta.1 | 3utb.1 | 3x1s.1 | 3x1t.1 | 3x1u.1 | 3x1v.1 | 4h9n.1 | 4h9o.1 | 4h9p.1 | 4h9p.2 | 4h9q.1 | 4h9q.2 | 4h9r.1 | 4h9r.2 | 4j8u.1 | 4j8v.1 | 4j8v.2 | 4j8v.3 | 4j8w.1 | 4j8x.1 | 4j8x.2 | 4j8x.3 | 4r8p.1 | 4wu8.1 | 4wu9.1 | 4xuj.1 | 5bnv.1 | 5bnx.1 | 5bo0.1 | 5bs7.1 | 5bsa.1 | 5cp6.1 | 5dnm.1 | 5dnn.1 | 5f99.1 | 5gsu.1 | 5gt0.1 | 5gt3.1 | 5hq2.1 | 5ja4.1 | 5kdm.1 | 5nl0.1 | 5nl0.2 | 5omx.1 | 5ong.1 | 5onw.1 | 5oxv.1 | 5oy7.1 | 5x0y.1 | 5xf6.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6fml.1 | 6iro.1 | 6jyl.1 | 6k1p.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6kix.1 | 6kiz.1 | 6nj9.1 | 6nn6.1 | 6nog.1 | 6nqa.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pwv.1 | 6pww.1 | 6pwx.1 | 6r1u.1 | 6r25.1 | 6s01.1 | 6t9l.1 | 6tda.1 | 6tem.1 | 6ugm.1 | 6uh5.1 | 6uxw.1 | 6ven.1 | 6vyp.1 | 6vyp.2 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6x59.1 | 6x5a.1 | 6xjd.1 | 7a08.1 | 7at8.1 | 7bwd.1 | 7ciz.1 | 7ciz.2 | 7ciz.3 | 7cj0.1 | 7cj0.2 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7e8d.1 | 7e8i.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7jzv.1 | 7mbm.1 | 7mbn.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7ssa.1 | 7swy.1 | 7tn2.1 | 7u50.1 | 7u51.1 | 7u52.1 | 7u53.1 | 7uv9.1 | 7v1m.1 | 7v1m.2 | 7xpx.1 | 7y8r.1 | 7yi1.1 | 7yi4.1 | 7yi5.1 | 7zs9.1 | 7zsa.1 | 7zsb.1 | 8aag.1 | 8atf.1 | 8av6.1 | 8cbn.1 | 8cbq.1 | 8ceo.1 | 8cww.1 | 8cze.1 | 8f86.1 | 8g86.1 | 8g88.1 | 8g8b.1 | 8g8g.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8hag.1 | 8hah.1 | 8hai.1 | 8haj.1 | 8hak.1 | 8hal.1 | 8ham.1 | 8han.1 | 8hxy.1 | 8hxz.1 | 8hy0.1 | 8ihm.1 | 8iht.1 | 8jbx.1 | 8jcc.1 | 8jcd.1 | 8jho.1 | 8kd2.1 | 8kd3.1 | 8kd4.1 | 8kd5.1 | 8kd6.1 | 8kd7.1 | 8oo7.1 | 8ooa.1 | 8oop.1 | 8oos.1 | 8pc5.1 | 8pc6.1 | 8peo.1 | 8pep.1 | 8qzm.1 | 8siy.1 | 8t3t.1 | 8t3w.1 | 8t3y.1 | 8t9f.1 | 8t9h.1 | 8thu.1 | 8uxq.1 | 8v4y.1 | 8v6v.1 | 8v7l.1 | 8vws.1 | 8vwt.1 | 8vwu.1 | 8vwv.1 | 8yv8.1 | 9eoz.1 | 9ipu.1