SMTL ID : 4d89.1

Crystal Structure of Human Beta Secretase in Complex with NVP-BXD552, derived from a soaking experiment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x BXD: (3S,4S,5R)-3-(4-AMINO-3-{[(2R)-3-ETHOXY-1,1,1-TRIFLUOROPROPAN-2-YL]OXY}-5-FLUOROBENZYL)-5-[(3-TERT-BUTYLBENZYL)AMINO]TETRAHYDRO-2H-THIOPYRAN-4-OL 1,1-DIOXIDE(Non-covalent)

BXD.1: 24 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, S.51, V.85, P.86, Y.87, T.88, Q.89, G.90, K.123, F.124, I.126, W.131, I.142, R.144, Y.214, D.244, G.246, T.247, T.248 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.46, A:V.85, A:Y.87, A:Y.87, A:Q.89, A:I.142, A:Y.214 Hydrogen bonds: A:D.48, A:K.123, A:D.244 pi-Stacking: A:Y.87 Halogen bonds: A:T.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rueeger, H. et al., Discovery of cyclic sulfone hydroxyethylamines as potent and selective beta-site APP-cleaving enzyme 1 (BACE1) inhibitors: structure based design and in vivo reduction of amyloid beta-peptides. J.Med.Chem. (2012)

Release Date

2012-11-21

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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