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SMTL ID : 5z3u.1

Structure of Snf2-nucleosome complex at shl2 in ADP BeFx state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-2-2-2-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1:

4 residues within 4Å:

Chain A: D.229, E.230, L.503
Ligands: ADP.2

2 PLIP interactions:

2 interactions with chain A

Metal complexes: A:D.229, A:D.229

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2:

14 residues within 4Å:

Chain A: T.101, Y.105, G.130, L.131, G.132, K.133, T.134, I.135, L.503, N.506, Q.508, I.535
Ligands: MG.1, BEF.3

12 PLIP interactions:

12 interactions with chain A

Hydrogen bonds: A:T.101, A:T.101, A:G.130, A:L.131, A:G.132, A:K.133, A:T.134, A:N.506, A:N.506, A:Q.508
Salt bridges: A:K.133
pi-Cation interactions: A:K.103

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.3:

5 residues within 4Å:

Chain A: G.130, L.503, N.506, R.534
Ligands: ADP.2

No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Li, M. et al., Mechanism of DNA translocation underlying chromatin remodelling by Snf2. Nature (2019)

Release Date

2019-05-22

Peptides

Transcription regulatory protein SNF2: A
Histone H3.2: BF
Histone H4: CG
Histone H2A: DH
Histone H2B 1.1: EI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
A

F
E

C
B

G
F

D
C

H
G

E
D

I
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Transcription regulatory protein SNF2

Histone H3.2

Histone H4

Histone H2A

Toggle Identical (DH)

Histone H2B 1.1

Toggle Identical (EI)

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