SMTL ID : 5z3v.1

Structure of Snf2-nucleosome complex at shl-2 in ADP BeFx state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-2-2-2-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: T.101, K.103, Y.105, D.127, G.130, L.131, G.132, K.133, T.134, I.135, W.173, N.506, Q.508, R.534, I.535 Ligands: BEF.2, MG.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.101, A:G.130, A:L.131, A:G.132, A:K.133, A:T.134, A:N.506, A:N.506, A:Q.508, A:R.534 Salt bridges: A:K.133, A:R.534

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 6 residues within 4Å: Chain A: L.505, N.506, R.531, R.534 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.229, E.230 Ligands: ADP.1, BEF.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Mechanism of DNA translocation underlying chromatin remodelling by Snf2. Nature (2019)

Release Date

2019-05-22

Peptides

Transcription regulatory protein SNF2: A
Histone H3.2: BF
Histone H4: CG
Histone H2A: DH
Histone H2B 1.1: EI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
O

B
A

F
E

C
B

G
F

D
C

H
G

E
D

I
H

Transcription regulatory protein SNF2

Histone H3.2

Histone H4

Histone H2A

Histone H2B 1.1

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