6g0l.1 | SWISS-MODEL Template Library

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SMTL ID : 6g0l.1

Structure of two molecules of the chromatin remodelling enzyme Chd1 bound to a nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-1-2-1-2-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1:	12 residues within 4Å: Chain K: E.375, L.376, R.377, G.406, K.407, T.408, V.409, W.447, N.779, M.781, R.807 Ligands: BEF.2 13 PLIP interactions: 13 interactions with chain K Hydrogen bonds: K:E.375, K:R.377, K:R.377, K:G.404, K:G.406, K:K.407, K:T.408, K:T.408, K:N.779, K:R.807 Salt bridges: K:K.407, K:R.807, K:R.807
ADP.4:	10 residues within 4Å: Chain L: L.376, Q.380, G.404, G.406, K.407, V.409, N.779, M.781, R.807 Ligands: BEF.3 6 PLIP interactions: 6 interactions with chain L Hydrogen bonds: L:G.404, L:G.406, L:K.407, L:N.779 Salt bridges: L:R.807, L:R.807

2 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2:	7 residues within 4Å: Chain K: M.403, K.407, E.514, I.778, R.804, R.807 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)
BEF.3:	4 residues within 4Å: Chain L: T.436, I.778, R.804 Ligands: ADP.4 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Sundaramoorthy, R. et al., Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome. Elife (2018)

Release Date

2018-08-22

Peptides

Histone H3: AE
Histone H4: BF
Histone H2A type 1: C
Histone H4: DH
Histone H2A type 1: G
Chromo domain-containing protein 1: KL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

D
D

H
H

G
G

K
M

L
W

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3

Histone H4

Histone H2A type 1

Histone H4

Histone H2A type 1

Chromo domain-containing protein 1

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