SMTL ID : 6jyl.1

The crosslinked complex of ISWI-nucleosome in the ADP.BeF-bound state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain K: Q.127, R.129, Q.132, E.154, M.155, G.156, L.157, G.158, K.159, T.160, L.161, E.195, N.518, R.546 Ligands: BEF.2, MG.3 13 PLIP interactions: 13 interactions with chain K Hydrogen bonds: K:Q.132, K:Q.132, K:E.154, K:G.156, K:L.157, K:G.158, K:K.159, K:T.160, K:N.518, K:N.518 Salt bridges: K:K.159, K:R.546, K:R.546

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 9 residues within 4Å: Chain K: M.155, D.256, E.257, G.516, Q.539, R.543, R.546 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain K: T.160 Ligands: ADP.1, BEF.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, L. et al., Structures of the ISWI-nucleosome complex reveal a conserved mechanism of chromatin remodeling. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-05-29

Peptides

Histone H3: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH
ISWI chromatin-remodeling complex ATPase ISW1: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
K

Histone H3

Histone H4

Histone H2A

Histone H2B 1.1

ISWI chromatin-remodeling complex ATPase ISW1

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