- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.80 Å
- Oligo State
- hetero-3-3-3-3-3-3-mer
- Ligands
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN.2: 13 residues within 4Å:- Chain E: S.207, E.209, P.210, V.252, L.259, N.260, N.374, C.375, G.376, C.441, V.442, S.443
- Ligands: NAG.12
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:G.376, E:V.442, E:S.207
NAG-NAG-BMA-MAN.4: 13 residues within 4Å:- Chain K: S.207, E.209, P.210, V.252, L.259, N.260, N.374, C.375, G.376, C.441, V.442, S.443
- Ligands: NAG.26
1 PLIP interactions:1 interactions with chain K- Hydrogen bonds: K:G.376, K:V.442, K:S.207
NAG-NAG-BMA-MAN.6: 13 residues within 4Å:- Chain Q: S.207, E.209, P.210, V.252, L.259, N.260, N.374, C.375, G.376, C.441, V.442, S.443
- Ligands: NAG.40
1 PLIP interactions:1 interactions with chain Q- Hydrogen bonds: Q:G.376, Q:V.442, Q:S.207
- 42 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.7: 6 residues within 4Å:- Chain E: Q.135, S.155, F.156, N.157, R.166, K.168
Ligand excluded by PLIPNAG.8: 7 residues within 4Å:- Chain E: Q.291, N.293, N.329, V.330, S.331, R.440, V.442
Ligand excluded by PLIPNAG.9: 3 residues within 4Å:- Chain E: E.92, N.93
- Chain F: S.17
Ligand excluded by PLIPNAG.10: 2 residues within 4Å:- Chain E: N.138, G.149
Ligand excluded by PLIPNAG.11: 3 residues within 4Å:- Chain E: S.385, G.386, N.389
Ligand excluded by PLIPNAG.12: 5 residues within 4Å:- Chain E: N.260, L.263, P.289, N.444
- Ligands: NAG-NAG-BMA-MAN.2
Ligand excluded by PLIPNAG.13: 5 residues within 4Å:- Chain E: N.232, I.270, R.271, S.272, H.349
Ligand excluded by PLIPNAG.14: 3 residues within 4Å:- Chain E: N.299, I.320, V.438
Ligand excluded by PLIPNAG.15: 6 residues within 4Å:- Chain E: T.295, H.327, N.329, S.409, T.411, R.440
Ligand excluded by PLIPNAG.16: 3 residues within 4Å:- Chain E: N.336, E.337, W.392
Ligand excluded by PLIPNAG.17: 5 residues within 4Å:- Chain E: N.360, S.361, T.369, D.383, S.385
Ligand excluded by PLIPNAG.18: 3 residues within 4Å:- Chain F: E.123, N.126, Y.127
Ligand excluded by PLIPNAG.19: 2 residues within 4Å:- Chain F: N.100, S.102
Ligand excluded by PLIPNAG.20: 4 residues within 4Å:- Chain F: N.105, R.106, N.107, E.110
Ligand excluded by PLIPNAG.21: 6 residues within 4Å:- Chain K: Q.135, S.155, F.156, N.157, R.166, K.168
Ligand excluded by PLIPNAG.22: 7 residues within 4Å:- Chain K: Q.291, N.293, N.329, V.330, S.331, R.440, V.442
Ligand excluded by PLIPNAG.23: 3 residues within 4Å:- Chain K: E.92, N.93
- Chain L: S.17
Ligand excluded by PLIPNAG.24: 2 residues within 4Å:- Chain K: N.138, G.149
Ligand excluded by PLIPNAG.25: 3 residues within 4Å:- Chain K: S.385, G.386, N.389
Ligand excluded by PLIPNAG.26: 5 residues within 4Å:- Chain K: N.260, L.263, P.289, N.444
- Ligands: NAG-NAG-BMA-MAN.4
Ligand excluded by PLIPNAG.27: 5 residues within 4Å:- Chain K: N.232, I.270, R.271, S.272, H.349
Ligand excluded by PLIPNAG.28: 3 residues within 4Å:- Chain K: N.299, I.320, V.438
Ligand excluded by PLIPNAG.29: 6 residues within 4Å:- Chain K: T.295, H.327, N.329, S.409, T.411, R.440
Ligand excluded by PLIPNAG.30: 3 residues within 4Å:- Chain K: N.336, E.337, W.392
Ligand excluded by PLIPNAG.31: 5 residues within 4Å:- Chain K: N.360, S.361, T.369, D.383, S.385
Ligand excluded by PLIPNAG.32: 3 residues within 4Å:- Chain L: E.123, N.126, Y.127
Ligand excluded by PLIPNAG.33: 2 residues within 4Å:- Chain L: N.100, S.102
Ligand excluded by PLIPNAG.34: 4 residues within 4Å:- Chain L: N.105, R.106, N.107, E.110
Ligand excluded by PLIPNAG.35: 6 residues within 4Å:- Chain Q: Q.135, S.155, F.156, N.157, R.166, K.168
Ligand excluded by PLIPNAG.36: 7 residues within 4Å:- Chain Q: Q.291, N.293, N.329, V.330, S.331, R.440, V.442
Ligand excluded by PLIPNAG.37: 3 residues within 4Å:- Chain Q: E.92, N.93
- Chain R: S.17
Ligand excluded by PLIPNAG.38: 2 residues within 4Å:- Chain Q: N.138, G.149
Ligand excluded by PLIPNAG.39: 3 residues within 4Å:- Chain Q: S.385, G.386, N.389
Ligand excluded by PLIPNAG.40: 5 residues within 4Å:- Chain Q: N.260, L.263, P.289, N.444
- Ligands: NAG-NAG-BMA-MAN.6
Ligand excluded by PLIPNAG.41: 5 residues within 4Å:- Chain Q: N.232, I.270, R.271, S.272, H.349
Ligand excluded by PLIPNAG.42: 3 residues within 4Å:- Chain Q: N.299, I.320, V.438
Ligand excluded by PLIPNAG.43: 6 residues within 4Å:- Chain Q: T.295, H.327, N.329, S.409, T.411, R.440
Ligand excluded by PLIPNAG.44: 3 residues within 4Å:- Chain Q: N.336, E.337, W.392
Ligand excluded by PLIPNAG.45: 5 residues within 4Å:- Chain Q: N.360, S.361, T.369, D.383, S.385
Ligand excluded by PLIPNAG.46: 3 residues within 4Å:- Chain R: E.123, N.126, Y.127
Ligand excluded by PLIPNAG.47: 2 residues within 4Å:- Chain R: N.100, S.102
Ligand excluded by PLIPNAG.48: 4 residues within 4Å:- Chain R: N.105, R.106, N.107, E.110
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Caniels, T.G. et al., Precise targeting of HIV broadly neutralizing antibody precursors in humans. Science (2025)
- Release Date
- 2025-05-21
- Peptides
- RM20A3 heavy chain Fv: AGM
206-3G08 heavy chain Fv: BHN
RM20A3 light chain Fv: CIO
206-3G08 lambda chain Fv: DJP
GT1.1 v4.1 SOSIP gp120: EKQ
Envelope glycoprotein gp160: FLR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GG
JM
OB
HH
KN
PC
II
MO
QD
LJ
NP
RE
AK
CQ
EF
BL
DR
F
SMTL ID : 9mia.1
206-3G08 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
RM20A3 heavy chain Fv
Toggle Identical (AGM)206-3G08 heavy chain Fv
Toggle Identical (BHN)RM20A3 light chain Fv
Toggle Identical (CIO)206-3G08 lambda chain Fv
Toggle Identical (DJP)GT1.1 v4.1 SOSIP gp120
Toggle Identical (EKQ)Envelope glycoprotein gp160
Toggle Identical (FLR)Related Entries With Identical Sequence
4tvp.1 | 4zmj.1 | 5aco.1 | 5c7k.1 | 5cez.2 | 5cjx.1 | 5fyl.1 | 5t3x.1 | 5t3z.1 | 5thr.1 | 5u7m.1 | 5u7o.1 | 5utf.1 | 5uty.1 | 5v7j.1 | 5v8l.1 | 5v8m.1 | 5viy.1 | 5vj6.1 | 5w6d.1 | 6cm3.1 | 6crq.1 | 6de7.1 | 6did.1 | 6mn7.1 | 6mtj.1 | 6mtn.1 | 6mu6.1 | 6mu7.1 | 6mu8.1 more...less...6nf2.1 | 6nf5.1 | 6nfc.1 | 6nm6.1 | 6nnf.1 | 6nnj.1 | 6opa.1 | 6osy.1 | 6ot1.1 | 6oz4.1 | 6ozc.1 | 6pw6.1 | 6u0l.1 | 6u0n.1 | 6udj.1 | 6vi0.1 | 6vn0.1 | 6w03.1 | 6x96.1 | 6x97.1 | 6x98.1 | 6x9r.1 | 6x9r.2 | 6x9r.3 | 6x9s.1 | 6x9s.2 | 6x9s.3 | 6x9t.1 | 6x9t.2 | 6x9t.3 | 6x9u.1 | 6x9u.2 | 6x9u.3 | 6x9v.1 | 6x9v.2 | 6x9v.3 | 6xrt.1 | 7kde.1 | 7lo6.1 | 7lok.1 | 7lpn.1 | 7mdu.1 | 7mxe.1 | 7pc2.1 | 7rai.1 | 7t74.1 | 7t75.1 | 7t75.2 | 7t75.3 | 7t9a.1 | 7t9b.1 | 7tfn.1 | 7tfo.1 | 7txd.1 | 7ucf.1 | 7uoj.1 | 8dp1.1 | 8dto.1 | 8e1p.1 | 8euu.1 | 8euv.1 | 8euw.1 | 8f92.1 | 8f9m.1 | 8fis.1 | 8fk5.1 | 8fl1.1 | 8flw.1 | 8fyj.1 | 8g85.1 | 8g9w.1 | 8g9x.1 | 8g9y.1 | 8gas.1 | 8jtd.1 | 8jtm.1 | 8sal.1 | 8san.1 | 8saq.1 | 8sat.1 | 8sav.1 | 8sw3.1 | 8sw4.1 | 8t49.1 | 8t4a.1 | 8t4b.1 | 8t4d.1 | 8t4l.1 | 8tjr.1 | 8tjs.1 | 8tkc.1 | 8tl2.1 | 8tl3.1 | 8tl4.1 | 8tl5.1 | 8tng.1 | 8tnh.1 | 8tni.1 | 8tnu.1 | 8to7.1 | 8top.1 | 8tq1.1 | 8ttw.1 | 8ulr.1 | 8uls.1 | 8ult.1 | 8ulu.1 | 8vfv.1 | 9aug.1 | 9auh.1 | 9aui.1 | 9d1w.1 | 9d3d.1 | 9d8y.1 | 9d98.1 | 9ehl.1 | 9ehm.1 | 9mi0.1 | 9mib.1 | 9mih.1 | 9mii.1