SMTL ID : 6nzo.1

Set2 bound to nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain K: C.129, C.143, N.151, C.158, C.163, C.169 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.143, K:C.158, K:C.163, K:C.169 ZN.2: 6 residues within 4Å: Chain K: C.129, C.131, C.143, C.149, N.151 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.129, K:C.131, K:C.143, K:C.149 ZN.3: 5 residues within 4Å: Chain K: H.259, C.261, C.308, C.310, C.315 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.261, K:C.308, K:C.310, K:C.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bilokapic, S. et al., Nucleosome and ubiquitin position Set2 to methylate H3K36. Nat Commun (2019)

Release Date

2019-08-28

Peptides

Histone H3: AE
Histone H4: BF
Ubiquitin-60S ribosomal protein L40,Histone H2A: CG
Histone H2B 1.1: DH
Histone-lysine N-methyltransferase: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
S

Histone H3

Histone H4

Ubiquitin-60S ribosomal protein L40,Histone H2A

Histone H2B 1.1

Histone-lysine N-methyltransferase

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