6y5d.1 | SWISS-MODEL Template Library

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SMTL ID : 6y5d.1

Structure of human cGAS (K394E) bound to the nucleosome

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-4-2-mer

Ligands

9 x PTD: PENTANEDIAL(Covalent)

PTD.1:	2 residues within 4Å: Chain A: K.42 Chain B: K.80 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:K.42, B:K.80
PTD.2:	3 residues within 4Å: Chain B: G.95 Chain C: K.100 Chain G: K.100 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain C Hydrophobic interactions: G:K.100, C:K.100
PTD.3:	2 residues within 4Å: Chain G: K.75 Chain K: K.195 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain G Hydrophobic interactions: K:K.195, G:K.75
PTD.4:	3 residues within 4Å: Chain D: Y.84, K.86 Chain H: K.35 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain D Hydrophobic interactions: H:K.35, D:K.86
PTD.5:	3 residues within 4Å: Chain C: K.37 Chain H: H.83, K.86 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain H Hydrophobic interactions: C:K.37, H:K.86
PTD.8:	2 residues within 4Å: Chain M: K.42 Chain N: K.80 2 PLIP interactions: 1 interactions with chain M, 1 interactions with chain N Hydrophobic interactions: M:K.42, N:K.80
PTD.9:	2 residues within 4Å: Chain O: K.100 Chain S: K.100 2 PLIP interactions: 1 interactions with chain S, 1 interactions with chain O Hydrophobic interactions: S:K.100, O:K.100
PTD.10:	2 residues within 4Å: Chain L: K.195 Chain S: K.75 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain S Hydrophobic interactions: L:K.195, S:K.75
PTD.11:	2 residues within 4Å: Chain P: K.86 Chain S: K.37 2 PLIP interactions: 1 interactions with chain S, 1 interactions with chain P Hydrophobic interactions: S:K.37, P:K.86

2 x ZN: ZINC ION(Non-covalent)

ZN.6:	4 residues within 4Å: Chain K: H.230, C.236, C.237, C.244 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.230, K:C.236, K:C.237, K:C.244
ZN.7:	4 residues within 4Å: Chain L: H.230, C.236, C.237, C.244 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:H.230, L:C.236, L:C.237, L:C.244

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Pathare, G.R. et al., Structural mechanism of cGAS inhibition by the nucleosome. Nature (2020)

Release Date

2020-09-23

Peptides

Histone H3.2: AEMQ
Histone H4: BFNR
Histone H2A type 2-A: CGOS
Histone H2B type 1-K: DHPT
Cyclic GMP-AMP synthase: KL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

M
M

Q
Q

B
B

F
F

N
N

R
R

C
C

G
G

O
O

S
S

D
D

H
H

P
P

T
T

K
K

L
L

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.2

Toggle Identical (AEM)

Histone H4

Histone H2A type 2-A

Histone H2B type 1-K

Toggle Identical (DT)

Cyclic GMP-AMP synthase

Toggle Identical (KL)

Related Entries With Identical Sequence

1eqz.1 | 1f66.1 | 1hq3.1 | 1tzy.1 | 1u35.1 | 2aro.1 | 2cv5.1 | 2f8n.1 | 3nqu.1 | 3r45.1 | 4hga.1 | 4kgc.1 | 4ld9.1 | 4z2m.1 | 4zux.1 | 4zux.2 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5e5a.1 | 5kgf.1 | 5o9g.1 | 5omx.1 | 5ong.1 | 5onw.1 | 5x0x.1 | 5xf3.1 more...less...

5xf4.1 | 5xf5.1 | 6buz.1 | 6e0c.1 | 6e0p.1 | 6ftx.1 | 6g0l.1 | 6hts.1 | 6i84.1 | 6j99.1 | 6kw3.1 | 6kw4.1 | 6kw5.1 | 6l9z.1 | 6la2.1 | 6la8.1 | 6la9.1 | 6lab.1 | 6ler.1 | 6ler.2 | 6ltj.1 | 6m3v.1 | 6m44.1 | 6m4d.1 | 6m4g.1 | 6m4h.1 | 6ne3.1 | 6nzo.1 | 6o1d.1 | 6o22.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pwv.1 | 6pww.1 | 6pwx.1 | 6px1.1 | 6px3.1 | 6r0c.1 | 6r8y.1 | 6rny.1 | 6ryr.1 | 6ryu.1 | 6se0.1 | 6se6.1 | 6see.1 | 6sef.1 | 6seg.1 | 6t79.1 | 6t7a.1 | 6t7b.1 | 6t7c.1 | 6t7d.1 | 6tem.1 | 6upk.1 | 6upl.1 | 6v92.1 | 6vz4.1 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6wkr.1 | 6y5e.1 | 6zhx.1 | 6zhy.1 | 7dbp.1 | 7jo9.1 | 7joa.1 | 7k5x.1 | 7k5y.1 | 7k60.1 | 7k61.1 | 7k63.1 | 7kbd.1 | 7kbe.1 | 7kbf.1 | 7m1x.1 | 7mbm.1 | 7mbn.1 | 7nkx.1 | 7nky.1 | 7nl0.1 | 7otq.1 | 7pet.1 | 7peu.1 | 7pev.1 | 7pew.1 | 7pex.1 | 7pey.1 | 7pez.1 | 7pf0.1 | 7pf2.1 | 7pf3.1 | 7pf4.1 | 7pf5.1 | 7pf6.1 | 7pfa.1 | 7pfc.1 | 7pfd.1 | 7pfe.1 | 7pff.1 | 7pft.1 | 7pfu.1 | 7pfv.1 | 7pfw.1 | 7pfx.1 | 7pii.1 | 7r5r.1 | 7ssa.1 | 7tan.1 | 7u0g.1 | 7u0i.1 | 7u0j.1 | 7u46.1 | 7u47.1 | 7u4d.1 | 7ud5.1 | 7unc.1 | 7und.1 | 7unk.1 | 7ux9.1 | 7v90.1 | 7v96.1 | 7v9c.1 | 7v9j.1 | 7v9k.1 | 7v9s.1 | 7va4.1 | 7vcq.1 | 7vcq.2 | 7vcq.3 | 7vdt.1 | 7vdv.1 | 7vvu.1 | 7vvz.1 | 7x3t.1 | 7x3v.1 | 7x3w.1 | 7x3x.1 | 7xfc.1 | 7xfh.1 | 7xfi.1 | 7xfj.1 | 7xfl.1 | 7xfm.1 | 7xfn.1 | 7xnp.1 | 7y5u.1 | 7y5v.1 | 7y5w.1 | 7y60.1 | 7y61.1 | 7ywx.1 | 7yyh.1 | 7zi4.1 | 8aag.1 | 8b0a.1 | 8bvw.1 | 8byq.1 | 8bz1.1 | 8dk5.1 | 8du4.1 | 8ett.1 | 8etv.1 | 8eu2.1 | 8eue.1 | 8euj.1 | 8evg.1 | 8evh.1 | 8evi.1 | 8evj.1 | 8g6g.1 | 8g6h.1 | 8g6q.1 | 8g6s.1 | 8gpn.1 | 8gxq.12 | 8gxq.79 | 8gxs.12 | 8gxs.81 | 8h1t.1 | 8iqf.1 | 8iqg.1 | 8j6s.1 | 8j6t.1 | 8jh2.1 | 8jh3.1 | 8jh4.1 | 8of4.1 | 8off.1 | 8pki.1 | 8pkj.1 | 8rbx.1 | 8sps.1 | 8spu.1 | 8svf.1 | 8syp.1 | 8thu.1 | 8tof.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8yjf.1 | 8yjm.1 | 8yti.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
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Extreme

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