7crp.1 | SWISS-MODEL Template Library

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SMTL ID : 7crp.1

NSD3 bearing E1181K/T1232A dual mutation in complex with 187-bp NCP (1:1 binding mode)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-mer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1:

18 residues within 4Å:

Chain K: R.476, G.477, W.478, G.479, F.520, Y.521, R.541, F.542, M.543, N.544, H.545, Y.582, T.592, E.593, C.594, H.595, C.596, L.605

7 PLIP interactions:

7 interactions with chain K

Hydrogen bonds: K:G.477, K:W.478, K:G.479, K:R.541, K:M.543, K:H.545, K:H.595

3 x ZN: ZINC ION(Non-covalent)

ZN.2:	4 residues within 4Å: Chain K: C.547, C.594, C.596, C.601 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:C.547, K:C.594, K:C.596
ZN.3:	5 residues within 4Å: Chain K: C.419, C.421, C.429, C.435 Ligands: ZN.4 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:C.419, K:C.429, K:C.435
ZN.4:	6 residues within 4Å: Chain K: C.429, C.444, C.449, C.455, N.457 Ligands: ZN.3 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:C.429, K:C.449

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Li, W. et al., Molecular basis of nucleosomal H3K36 methylation by NSD methyltransferases. Nature (2021)

Release Date

2020-10-21

Peptides

Histone H3: AE
Histone H4: BF
Histone H2A: CG
Histone H2B: DH
Histone-lysine N-methyltransferase NSD3: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
I

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3

Histone H4

Histone H2A

Histone H2B

Histone-lysine N-methyltransferase NSD3

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