7crr.1 | SWISS-MODEL Template Library

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SMTL ID : 7crr.1

Native NSD3 bound to 187-bp nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-mer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1:

13 residues within 4Å:

Chain K: R.476, G.477, W.478, G.479, F.520, R.541, F.542, N.544, Y.582, E.593, H.595, C.596, L.605

9 PLIP interactions:

9 interactions with chain K

Hydrogen bonds: K:R.476, K:G.477, K:W.478, K:G.479, K:F.520, K:N.544, K:H.595, K:H.595
pi-Cation interactions: K:Y.521

3 x ZN: ZINC ION(Non-covalent)

ZN.2:	4 residues within 4Å: Chain K: C.547, C.594, C.596, C.601 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:C.547, K:C.596, K:C.601
ZN.3:	4 residues within 4Å: Chain K: C.419, C.421, C.429, C.435 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.419, K:C.421, K:C.429, K:C.435
ZN.4:	4 residues within 4Å: Chain K: C.429, C.444, C.449, C.455 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.429, K:C.444, K:C.449, K:C.455

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Li, W. et al., Molecular basis of nucleosomal H3K36 methylation by NSD methyltransferases. Nature (2021)

Release Date

2020-10-21

Peptides

Histone H3: AE
Histone H4: BF
Histone H2A: CG
Histone H2B: DH
Histone-lysine N-methyltransferase NSD3: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
I

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3

Histone H4

Histone H2A

Histone H2B

Histone-lysine N-methyltransferase NSD3

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