SMTL ID : 7ud5.1

Complex between MLL1-WRAD and an H2B-ubiquitinated nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-1-1-1-1-2-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Covalent)

SAH.1: 13 residues within 4Å: Chain K: H.96, R.98, C.139, Y.140, R.160, F.161, I.162, N.163, H.164, Y.201, L.212, P.213, L.225 7 PLIP interactions: 7 interactions with chain K Hydrogen bonds: K:R.98, K:C.139, K:Y.140, K:Y.140, K:I.162, K:H.164, K:H.164

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain K: C.216, G.217, A.218, C.221 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:C.216, K:C.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rahman, S. et al., Multistate structures of the MLL1-WRAD complex bound to H2B-ubiquitinated nucleosome. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-09-21

Peptides

Histone H3: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH
cDNA FLJ56846, highly similar to Zinc finger protein HRX: K
WD repeat-containing protein 5: L
Set1/Ash2 histone methyltransferase complex subunit ASH2: M
Retinoblastoma-binding protein 5: N
Polyubiquitin-B: O
Protein dpy-30 homolog: PQ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

Histone H3

Histone H4

Histone H2A

Histone H2B 1.1

cDNA FLJ56846, highly similar to Zinc finger protein HRX

WD repeat-containing protein 5

Set1/Ash2 histone methyltransferase complex subunit ASH2

Retinoblastoma-binding protein 5

Polyubiquitin-B

Protein dpy-30 homolog

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