SMTL ID : 7vdt.1

The motor-nucleosome module of human chromatin remodeling PBAF-nucleosome complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-2-2-2-mer

Ligands

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.1: 8 residues within 4Å: Chain A: M.623, K.627, E.724, G.1004, R.1031, R.1034 Ligands: MG.2, ADP.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.628, D.723 Ligands: BEF.1, ADP.3 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.3: 19 residues within 4Å: Chain A: V.595, L.596, K.597, Q.600, E.622, M.623, G.624, L.625, G.626, K.627, T.628, I.629, W.667, N.1006, Q.1008, R.1034, I.1035 Ligands: BEF.1, MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:K.597, A:Q.600, A:Q.600, A:L.625, A:G.626, A:K.627, A:I.629, A:N.1006, A:Q.1008 Salt bridges: A:K.627, A:R.1034, A:R.1034

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, J.J. et al., Structure of human chromatin-remodelling PBAF complex bound to a nucleosome. Nature (2022)

Release Date

2022-05-18

Peptides

Isoform 2 of Transcription activator BRG1: A
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH
Histone H3: EK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

F
F

C
C

G
G

D
D

H
H

E
E

K
K

Isoform 2 of Transcription activator BRG1

Histone H4

Histone H2A

Histone H2B 1.1

Histone H3

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