SMTL ID : 8v7l.1

Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 2)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain K: W.177, K.179, L.180, R.181, Q.184, M.207, G.208, L.209, G.210, K.211, T.212, L.213, E.247, R.250, W.251, N.567, R.595, I.596 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain K Hydrogen bonds: K:R.181, K:Q.184, K:Q.184, K:G.208, K:L.209, K:G.210, K:K.211, K:T.212, K:T.212, K:T.212, K:R.250, K:N.567, K:R.595, K:R.595 Salt bridges: K:K.211, K:R.595 pi-Stacking: K:W.251 pi-Cation interactions: K:R.181

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain K: T.212, T.240, G.565 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chio, U.S. et al., Functionalized graphene-oxide grids enable high-resolution cryo-EM structures of the SNF2h-nucleosome complex without crosslinking. Nat Commun (2024)

Release Date

2024-03-20

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A type 1: CG
Histone H2B: DH
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
W

Histone H3.2

Histone H4

Histone H2A type 1

Histone H2B

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5

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