SMTL ID : 9d8y.1

Cryo-EM structure of HIV-1 BG505 SOSIP.664 Env bound to 3-sCD4, 3-VRC34.01 Fab with one gp120 rotated

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 4.06 Å
Oligo State
hetero-3-3-3-3-3-mer
Ligands
3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Thakur, B. et al., Cryo-EM structure of HIV-1 BG505 SOSIP.664 Env bound to 3-sCD4, 3-VRC34.01 Fab with one gp120 rotated. To Be Published
Release Date
2025-04-30
Peptides
Envelope glycoprotein gp160: ABC
Envelope glycoprotein gp160: DEF
VRC34.01 Fab Heavy Chain: GIK
VRC34.01 Fab Light Chain: HJL
T-cell surface glycoprotein CD4: MNO
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
I
I
K
K
H
H
J
J
L
L
M
M
N
N
O
O

Envelope glycoprotein gp160

Envelope glycoprotein gp160

VRC34.01 Fab Heavy Chain

Toggle Identical (GIK)

VRC34.01 Fab Light Chain

Toggle Identical (HJL)

T-cell surface glycoprotein CD4

Toggle Identical (MO)

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4tvp.1 | 4zmj.1 | 5aco.1 | 5c7k.1 | 5cez.2 | 5cjx.1 | 5fyl.1 | 5i8c.1 | 5i8h.1 | 5i8h.2 | 5t3x.1 | 5t3z.1 | 5thr.1 | 5u7m.1 | 5u7o.1 | 5utf.1 | 5uty.1 | 5v7j.1 | 5v8l.1 | 5v8m.1 | 5viy.1 | 5vj6.1 | 5w6d.1 | 6cm3.1 | 6crq.1 | 6de7.1 | 6did.1 | 6me1.1 | 6me1.2 | 6mn7.1  more...