SMTL ID : 1evr.1

The structure of the resorcinol/insulin R6 hexamer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-6-6-mer

Ligands

8 x RCO: RESORCINOL(Non-covalent)

RCO.1: 10 residues within 4Å: Chain A: C.6, S.9, I.10, C.11 Chain B: C.7, H.10, L.11, A.14 Chain F: H.5 Chain H: L.17 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 1 interactions with chain F Hydrophobic interactions: B:H.10, B:L.11 Hydrogen bonds: A:C.11 Water bridges: F:H.5 RCO.2: 4 residues within 4Å: Chain A: L.13, E.17 Chain G: L.13, Y.14 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain G Hydrophobic interactions: A:L.13, G:L.13, G:L.13, G:Y.14 Hydrogen bonds: A:L.13 RCO.4: 6 residues within 4Å: Chain B: N.3, L.6 Chain F: N.3, L.6 Chain J: F.1, N.3 6 PLIP interactions: 2 interactions with chain J, 3 interactions with chain B, 1 interactions with chain F Hydrophobic interactions: J:N.3, B:N.3, B:L.6, F:L.6 pi-Stacking: J:F.1 Water bridges: B:N.3 RCO.5: 10 residues within 4Å: Chain C: C.6, S.9, I.10, C.11, L.16 Chain D: H.10, L.11, A.14 Chain J: L.17 Chain L: H.5 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D, 2 interactions with chain L Hydrogen bonds: C:C.11 Hydrophobic interactions: D:L.11 Water bridges: L:H.5 pi-Stacking: L:H.5 RCO.8: 8 residues within 4Å: Chain E: C.6, S.9, I.10, C.11 Chain F: L.11, A.14 Chain J: H.5 Chain L: L.17 4 PLIP interactions: 2 interactions with chain E, 1 interactions with chain F, 1 interactions with chain J Hydrophobic interactions: E:I.10, F:L.11 Hydrogen bonds: E:C.11 pi-Stacking: J:H.5 RCO.9: 10 residues within 4Å: Chain B: L.17 Chain D: H.5 Chain G: C.6, S.9, I.10, C.11 Chain H: C.7, H.10, L.11, A.14 4 PLIP interactions: 2 interactions with chain H, 1 interactions with chain G, 1 interactions with chain D Hydrophobic interactions: H:H.10, H:L.11 Hydrogen bonds: G:C.11 pi-Stacking: D:H.5 RCO.10: 11 residues within 4Å: Chain B: H.5, L.6 Chain D: L.17 Chain I: C.6, S.9, I.10, C.11 Chain J: C.7, H.10, L.11, A.14 6 PLIP interactions: 3 interactions with chain J, 2 interactions with chain B, 1 interactions with chain I Hydrophobic interactions: J:H.10, J:L.11, B:L.6 Water bridges: J:A.14, B:H.5 Hydrogen bonds: I:C.11 RCO.13: 10 residues within 4Å: Chain F: L.17 Chain H: H.5 Chain K: C.6, S.9, I.10, C.11 Chain L: C.7, H.10, L.11, A.14 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain K Hydrophobic interactions: L:H.10, L:L.11 Hydrogen bonds: K:C.11

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: CL.11 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain B, 1 interactions with chain J Metal complexes: F:H.10, B:H.10, J:H.10 ZN.6: 4 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: CL.7 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain D, 1 interactions with chain L Metal complexes: H:H.10, D:H.10, L:H.10

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 7 residues within 4Å: Chain D: L.6, H.10 Chain H: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.6 Ligand excluded by PLIP CL.11: 7 residues within 4Å: Chain B: L.6, H.10 Chain F: L.6, H.10 Chain J: L.6, H.10 Ligands: ZN.3 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.12: 2 residues within 4Å: Chain J: F.1, N.3 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:F.1, J:N.3, J:N.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, G.D. et al., R6 hexameric insulin complexed with m-cresol or resorcinol. Acta Crystallogr.,Sect.D (2000)

Release Date

2000-12-04

Peptides

INSULIN: ACEGIK
INSULIN: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

B
B

D
D

F
F

H
H

J
J

L
L

INSULIN

INSULIN

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