SMTL ID : 1hoc.1

THE THREE-DIMENSIONAL STRUCTURE OF H-2DB AT 2.4 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ANTIGEN-DETERMINANT SELECTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- SER- ASN- GLU- ASN- MET- GLU- THR- MET: 9-RESIDUE PEPTIDE(Non-covalent)

ALA-SER-ASN-GLU-ASN-MET-GLU-THR-MET.1: 24 residues within 4Å: Chain A: Y.7, Y.45, Y.59, E.63, K.66, Q.70, W.73, V.76, S.77, N.80, Y.84, Q.97, F.116, Y.123, I.124, T.143, K.146, W.147, S.150, H.155, Y.156, Y.159, W.167, Y.171 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:W.73, A:V.76, A:Y.159, A:W.167 Hydrogen bonds: A:Y.7, A:Y.45, A:Y.59, A:E.63, A:K.66, A:Q.70, A:Q.70, A:S.77, A:N.80, A:Y.84, A:Q.97, A:K.146, A:K.146, A:W.147, A:S.150, A:H.155, A:Y.156, A:Y.156, A:Y.171, A:Y.171 Water bridges: A:E.9 Salt bridges: A:K.146, A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Young, A.C. et al., The three-dimensional structure of H-2Db at 2.4 A resolution: implications for antigen-determinant selection. Cell(Cambridge,Mass.) (1994)

Release Date

1994-04-30

Peptides

CLASS I HISTOCOMPATIBILITY ANTIGEN (H2-DB) (ALPHA CHAIN): A
BETA 2-MICROGLOBULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CLASS I HISTOCOMPATIBILITY ANTIGEN (H2-DB) (ALPHA CHAIN)

BETA 2-MICROGLOBULIN

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