SMTL ID : 1juf.1

Structure of Minor Histocompatibility Antigen peptide, H13b, complexed to H2-Db

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SER- SER- VAL- ILE- GLY- VAL- TRP- TYR- LEU: H13b peptide(Non-covalent)

SER-SER-VAL-ILE-GLY-VAL-TRP-TYR-LEU.1: 24 residues within 4Å: Chain A: Y.7, Y.45, E.63, K.66, Q.70, W.73, V.76, S.77, N.80, L.81, Y.84, L.95, S.99, T.143, K.146, W.147, S.150, A.152, H.155, Y.156, Y.159, E.163, W.167, Y.171 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:K.66, A:W.73, A:W.73, A:V.76, A:V.76, A:L.81, A:L.95, A:T.143, A:W.147, A:A.152, A:H.155, A:Y.156, A:Y.159, A:Y.159 Hydrogen bonds: A:Y.7, A:Y.45, A:Y.45, A:E.63, A:K.66, A:Q.70, A:Q.70, A:S.77, A:N.80, A:K.146, A:E.163, A:W.167, A:Y.171, A:Y.171 Water bridges: A:S.24, A:W.73, A:Q.97, A:H.155, A:Y.156 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ostrov, D.A. et al., How H13 histocompatibility peptides differing by a single methyl group and lacking conventional MHC binding anchor motifs determine self-nonself discrimination. J.Immunol. (2002)

Release Date

2002-03-20

Peptides

H2-Db major histocompatibility antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H2-Db major histocompatibility antigen

Beta-2-microglobulin

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