- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-oligomer
- Ligands
- 1 x FE2: FE (II) ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.8: 22 residues within 4Å:- Chain A: F.181, A.184, L.185, L.189, L.219, V.220
- Chain B: S.59, L.60, G.63, L.64, A.125, V.126, W.129, T.146, A.149, F.150, A.153, A.273, V.274, T.277
- Ligands: BCL.4, BCL.6
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.60, B:L.64, B:A.125, B:A.149, B:F.150, B:A.153, B:T.277, A:A.184, A:L.185
- pi-Stacking: B:F.150
BPH.9: 27 residues within 4Å:- Chain A: F.41, A.42, I.46, I.49, A.93, F.97, W.100, E.104, I.117, A.120, F.121, A.124, Y.148, H.153, S.237, L.238, V.241
- Chain B: Y.210, A.213, L.214, M.218, W.252, M.256
- Ligands: BCL.5, BCL.7, U10.10, LDA.17
15 PLIP interactions:3 interactions with chain B, 12 interactions with chain A- Hydrophobic interactions: B:Y.210, B:A.213, B:L.214, A:A.42, A:I.46, A:I.49, A:A.120, A:F.121, A:F.121, A:Y.148, A:Y.148, A:L.238, A:V.241, A:V.241
- pi-Stacking: A:F.121
- 1 x U10: UBIQUINONE-10(Non-covalent)
U10.10: 22 residues within 4Å:- Chain A: W.100
- Chain B: L.214, M.218, H.219, T.222, I.223, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, M.262, I.265, W.268, M.272
- Ligands: BCL.5, BCL.7, BPH.9, LDA.19
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:L.214, B:M.218, B:H.219, B:W.252, B:F.258, B:F.258, B:A.260, B:I.265, B:W.268, B:W.268
- Hydrogen bonds: B:A.260
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.11: 27 residues within 4Å:- Chain A: Y.162
- Chain B: L.191
- Chain D: Q.14, C.15, C.18, H.19, T.36, G.37, P.38, R.46, A.48, G.49, F.54, G.56, Y.57, G.58, M.61, W.71, F.76, Y.79, V.80, K.99, M.100, T.101, F.102, L.104, I.113
29 PLIP interactions:27 interactions with chain D, 1 interactions with chain A, 1 interactions with chain B,- Hydrophobic interactions: D:P.38, D:F.54, D:W.71, D:F.76, D:F.76, D:V.80, D:K.99, D:F.102, D:F.102, D:F.102, D:L.104, D:I.113, A:Y.162, B:L.191
- Hydrogen bonds: D:G.49, D:G.58, D:K.99
- Water bridges: D:R.46, D:T.50, D:M.61, D:Y.79, D:Y.79
- Salt bridges: D:R.46
- pi-Stacking: D:H.19, D:H.19, D:H.19, D:Y.79
- pi-Cation interactions: D:H.19
- Metal complexes: D:H.19
- 9 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.12: 9 residues within 4Å:- Chain B: W.148, S.152, W.155, R.267, I.270, W.271, L.278
- Chain C: Y.30
- Ligands: CL.2
6 PLIP interactions:2 interactions with chain C, 4 interactions with chain B- Hydrogen bonds: C:Y.30, C:Y.30
- Hydrophobic interactions: B:W.155, B:I.270, B:W.271, B:L.278
LDA.13: 7 residues within 4Å:- Chain B: P.200, L.204, A.207, F.208
- Chain C: W.21, I.28
- Ligands: BCL.7
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:F.208, C:W.21, C:I.28
LDA.14: 5 residues within 4Å:- Chain C: M.175, A.176, M.193, Q.194
- Ligands: HTO.21
No protein-ligand interaction detected (PLIP)LDA.15: 11 residues within 4Å:- Chain B: F.67, I.70, F.74, M.122, W.157, V.175, P.176, Y.177, G.178, H.182
- Ligands: BCL.4
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:F.67, B:F.67, B:F.74, B:Y.177, B:H.182
- Hydrogen bonds: B:Y.177
LDA.16: 3 residues within 4Å:- Chain A: W.59, I.64
- Ligands: LDA.17
No protein-ligand interaction detected (PLIP)LDA.17: 6 residues within 4Å:- Chain A: I.49, P.61, I.64
- Ligands: BCL.7, BPH.9, LDA.16
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.64, A:I.150
LDA.18: 6 residues within 4Å:- Chain A: V.98, A.101, V.105, Y.115, P.118, F.119
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:A.101
LDA.19: 3 residues within 4Å:- Chain C: W.21
- Ligands: BCL.5, U10.10
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:W.21, C:W.21
- pi-Cation interactions: C:W.21
LDA.20: 4 residues within 4Å:- Chain A: P.171, W.262, W.263, W.265
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:P.171, A:W.262, A:W.262, A:W.263, A:W.265, A:W.265
- Water bridges: A:W.262
- 2 x HTO: HEPTANE-1,2,3-TRIOL(Non-covalent)
HTO.21: 4 residues within 4Å:- Chain A: H.116, R.231
- Chain B: S.227
- Ligands: LDA.14
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.231, B:S.227, B:S.227
HTO.22: 8 residues within 4Å:- Chain A: D.155, N.159
- Chain B: N.195
- Chain D: Q.16, T.17, R.32, N.33, A.34
5 PLIP interactions:2 interactions with chain A, 2 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: A:D.155
- Water bridges: A:D.155, B:Y.198
- Hydrogen bonds: B:N.195, D:R.32
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Axelrod, H.L. et al., X-ray structure determination of the cytochrome c2: reaction center electron transfer complex from Rhodobacter sphaeroides. J.Mol.Biol. (2002)
- Release Date
- 2002-06-12
- Peptides
- REACTION CENTER PROTEIN L CHAIN: A
REACTION CENTER PROTEIN M CHAIN: B
REACTION CENTER PROTEIN H CHAIN: C
cytochrome c-2: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
HD
C - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 1l9b.1
X-Ray Structure of the Cytochrome-c(2)-Photosynthetic Reaction Center Electron Transfer Complex from Rhodobacter sphaeroides in Type II Co-Crystals
REACTION CENTER PROTEIN L CHAIN
REACTION CENTER PROTEIN M CHAIN
REACTION CENTER PROTEIN H CHAIN
cytochrome c-2
Related Entries With Identical Sequence
1aig.1 | 1aig.2 | 1aij.1 | 1aij.2 | 1cxa.1 | 1cxc.1 | 1ds8.1 | 1ds8.2 | 1dv3.1 | 1dv3.2 | 1dv6.1 | 1dv6.2 | 1e14.1 | 1e6d.1 | 1f6n.1 | 1fnp.1 | 1fnq.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1jh0.1 | 1k6l.1 | 1k6n.1 | 1kby.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1ogv.1 more...less...1pcr.1 |
1qov.1 |
1rg5.1 |
1rgn.1 |
1rqk.1 |
1ry5.1 |
1rzh.1 |
1rzz.1 |
1rzz.2 |
1s00.1 |
1s00.2 |
1umx.1 |
1yf6.1 |
1yst.1 |
1z9j.1 |
1z9k.1 |
1z9k.2 |
2bnp.1 |
2bns.1 |
2boz.1 |
2cxb.1 |
2cxb.2 |
2gmr.1 |
2gnu.1 |
2hg3.1 |
2hg9.1 |
2hh1.1 |
2hhk.1 |
2hit.1 |
2hj6.1 |
2j8c.1 |
2j8d.1 |
2jiy.1 |
2jj0.1 |
2rcr.1 |
2uws.1 |
2uwt.1 |
2uwu.1 |
2uwv.1 |
2uww.1 |
2ux3.1 |
2ux4.1 |
2ux5.1 |
2uxj.1 |
2uxk.1 |
2uxl.1 |
2uxm.1 |
2wx5.1 |
3dsy.1 |
3dta.1 |
3dtr.1 |
3dts.1 |
3du2.1 |
3du3.1 |
3duq.1 |
3i4d.1 |
3zum.1 |
3zuw.1 |
4h99.1 |
4h9l.1 |
4hbh.1 |
4hbj.1 |
4in6.1 |
4lwy.1 |
4n7k.1 |
4n7l.1 |
4rcr.1 |
4tqq.1 |
4v9g.30 |
4v9g.62 |
5lri.1 |
5lse.1