SMTL ID : 1ldp.1

CRYSTAL STRUCTURE OF MURINE MHC CLASS I H-2LD WITH A MIXTURE OF BOUND PEPTIDES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ALA- PRO- ALA- ALA- ALA- ALA- ALA- ALA- MET: PEPTIDE(Non-covalent)

ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET.1: 26 residues within 4Å: Chain A: Y.7, Y.45, I.66, Q.70, W.73, N.77, L.95, W.97, Y.99, F.116, Y.123, T.143, W.147, Y.155, Y.159, W.167, Y.171 Ligands: GLN-LEU-SER-PRO-PHE-PRO-PHE-ASP-LEU.2, GLN-LEU-SER-PRO-PHE-PRO-PHE-ASP-LEU.2, GLN-LEU-SER-PRO-PHE-PRO-PHE-ASP-LEU.2, GLN-LEU-SER-PRO-PHE-PRO-PHE-ASP-LEU.2, GLN-LEU-SER-PRO-PHE-PRO-PHE-ASP-LEU.2, GLN-LEU-SER-PRO-PHE-PRO-PHE-ASP-LEU.2, GLN-LEU-SER-PRO-PHE-PRO-PHE-ASP-LEU.2, GLN-LEU-SER-PRO-PHE-PRO-PHE-ASP-LEU.2, GLN-LEU-SER-PRO-PHE-PRO-PHE-ASP-LEU.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.45, A:W.73, A:W.73, A:W.97, A:W.147, A:Y.159, A:W.167 Hydrogen bonds: A:Y.7, A:Q.70, A:Q.70, A:N.77, A:N.77, A:Y.99, A:Y.99, A:Y.123, A:Y.155, A:Y.159, A:Y.171 ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET.2: 36 residues within 4Å: Chain A: Y.7, E.9, Y.22, Y.45, Y.59, R.62, I.63, I.66, Q.70, W.73, V.76, N.77, W.97, Y.99, F.116, Y.123, I.124, T.143, W.147, A.150, A.152, Y.155, Y.156, Y.159, E.163, W.167, Y.171 Ligands: ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET.1, ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET.1, ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET.1, ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET.1, ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET.1, ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET.1, ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET.1, ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET.1, ALA-PRO-ALA-ALA-ALA-ALA-ALA-ALA-MET.1 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:Y.45, A:Y.45, A:I.63, A:I.66, A:W.73, A:W.73, A:W.73, A:W.97, A:W.97, A:F.116, A:F.116, A:Y.123, A:I.124, A:T.143, A:W.147, A:A.150, A:Y.155, A:Y.155, A:Y.156, A:W.167 Hydrogen bonds: A:Y.7, A:Y.59, A:R.62, A:Q.70, A:Q.70, A:N.77, A:N.77, A:N.77, A:Y.123, A:Y.123, A:Y.159, A:E.163, A:E.163, A:Y.171

1 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NDG.3: 2 residues within 4Å: Chain A: K.173, N.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.176, A:K.173, A:K.173

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: Y.84, N.86 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Speir, J.A. et al., Structural basis of 2C TCR allorecognition of H-2Ld peptide complexes. Immunity (1998)

Release Date

1998-06-17

Peptides

MHC CLASS I H-2LD: A
MHC CLASS I H-2LD: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

MHC CLASS I H-2LD

MHC CLASS I H-2LD

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