SMTL ID : 1rk0.1

Mhc Class I H-2Kb Heavy Chain Complexed With beta-2 Microglobulin and Herpes Simplex Virus Glycoprotein B peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SER- SER- ILE- GLU- PHE- ALA- ARG- LEU: Glycoprotein B(Non-covalent)

SER-SER-ILE-GLU-PHE-ALA-ARG-LEU.1: 24 residues within 4Å: Chain A: Y.7, V.9, E.24, Y.45, E.63, K.66, N.70, S.73, F.74, D.77, T.80, Y.84, V.97, Q.114, Y.116, T.143, K.146, W.147, E.152, R.155, L.156, Y.159, W.167, Y.171 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:V.9, A:F.74, A:V.97, A:Y.116, A:W.147, A:L.156, A:Y.159, A:Y.159 Hydrogen bonds: A:Y.7, A:E.24, A:Y.45, A:K.66, A:N.70, A:S.73, A:D.77, A:R.155, A:R.155, A:Y.159, A:Y.171, A:Y.171 Water bridges: A:Y.45, A:E.63, A:S.73, A:D.77, A:D.77, A:T.80, A:E.152, A:E.152, A:Y.159 Salt bridges: A:D.77, A:K.146

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.86 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miley, M.J. et al., Structural Basis for the Restoration of TCR Recognition of an MHC Allelic Variant by Peptide Secondary Anchor Substitution. J.Exp.Med. (2004)

Release Date

2004-12-14

Peptides

H-2 class I histocompatibility antigen, K-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, K-B alpha chain

Beta-2-microglobulin

Related Entries With Identical Sequence