SMTL ID : 2vk0.1

Crystal structure form ultalente insulin microcrystals

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-6-6-mer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.6, ZN.11 5 PLIP interactions: 1 interactions with chain J, 1 interactions with chain B, 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: J:H.10, B:H.10, F:H.10, H2O.2, H2O.5 ZN.3: 5 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.8, ZN.13 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain D, 1 interactions with chain H Metal complexes: L:H.10, D:H.10, H:H.10 ZN.4: 5 residues within 4Å: Chain D: H.10, E.13 Chain J: E.13 Chain L: S.9 Ligands: ZN.5 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.10, D:E.13, H2O.3, H2O.3 ZN.5: 7 residues within 4Å: Chain B: E.13 Chain D: E.13 Chain J: E.13 Chain L: E.13 Ligands: ZN.4, ZN.10, ZN.15 4 PLIP interactions: 1 interactions with chain D, 2 interactions with chain J, 1 Ligand-Water interactions Metal complexes: D:E.13, J:E.13, J:E.13, H2O.3 ZN.6: 5 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.1, ZN.11 5 PLIP interactions: 1 interactions with chain J, 1 interactions with chain B, 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: J:H.10, B:H.10, F:H.10, H2O.2, H2O.5 ZN.8: 5 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.3, ZN.13 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain D, 1 interactions with chain H Metal complexes: L:H.10, D:H.10, H:H.10 ZN.9: 5 residues within 4Å: Chain B: E.13 Chain D: S.9 Chain H: H.10, E.13 Ligands: ZN.10 4 PLIP interactions: 2 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:H.10, H:E.13, H2O.6, H2O.6 ZN.10: 7 residues within 4Å: Chain B: E.13 Chain D: E.13 Chain F: E.13 Chain H: E.13 Ligands: ZN.5, ZN.9, ZN.15 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: B:E.13, B:E.13, H:E.13, H2O.6 ZN.11: 5 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.1, ZN.6 5 PLIP interactions: 1 interactions with chain J, 1 interactions with chain B, 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: J:H.10, B:H.10, F:H.10, H2O.2, H2O.5 ZN.13: 5 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.3, ZN.8 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain D, 1 interactions with chain H Metal complexes: L:H.10, D:H.10, H:H.10 ZN.14: 5 residues within 4Å: Chain F: E.13 Chain H: S.9 Chain L: H.10, E.13 Ligands: ZN.15 4 PLIP interactions: 2 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:H.10, L:E.13, H2O.8, H2O.8 ZN.15: 7 residues within 4Å: Chain F: E.13 Chain H: E.13 Chain J: E.13 Chain L: E.13 Ligands: ZN.5, ZN.10, ZN.14 4 PLIP interactions: 2 interactions with chain F, 1 interactions with chain L, 1 Ligand-Water interactions Metal complexes: F:E.13, F:E.13, L:E.13, H2O.8

3 x MPB: 4-HYDROXY-BENZOIC ACID METHYL ESTER(Non-covalent)

MPB.2: 8 residues within 4Å: Chain C: L.13, Y.14, E.17 Chain D: V.18 Chain I: L.13, Y.14, E.17 Chain J: V.18 8 PLIP interactions: 3 interactions with chain I, 4 interactions with chain C, 1 interactions with chain J Hydrophobic interactions: I:L.13, I:L.13, I:Y.14, C:L.13, C:L.13, C:Y.14, C:Y.14 Hydrogen bonds: J:V.18 MPB.7: 8 residues within 4Å: Chain A: L.13, Y.14, E.17 Chain B: V.18 Chain G: L.13, Y.14, E.17 Chain H: V.18 8 PLIP interactions: 4 interactions with chain G, 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: G:L.13, G:L.13, G:Y.14, G:Y.14, A:L.13, A:L.13, A:Y.14 Hydrogen bonds: B:V.18 MPB.12: 8 residues within 4Å: Chain E: L.13, Y.14, E.17 Chain F: V.18 Chain K: L.13, Y.14, E.17 Chain L: V.18 8 PLIP interactions: 3 interactions with chain E, 1 interactions with chain F, 4 interactions with chain K Hydrophobic interactions: E:L.13, E:L.13, E:Y.14, K:L.13, K:L.13, K:Y.14, K:Y.14 Hydrogen bonds: F:V.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagner, A. et al., Crystal Structure of Ultralente--A Microcrystalline Insulin Suspension. Proteins (2009)

Release Date

2008-09-16

Peptides

INSULIN A CHAIN: ACEGIK
INSULIN B CHAIN: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
A

G
C

I
A

K
C

B
B

D
D

F
B

H
D

J
B

L
D

INSULIN A CHAIN

INSULIN B CHAIN

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