SMTL ID : 8vfm.1

Salmonella effector protein SipA decorated actin filament

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-8-mer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain E: G.158 Ligands: ADP.2 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain F: G.158 Ligands: ADP.4 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain G: K.20 Ligands: ADP.6 No protein-ligand interaction detected (PLIP) MG.7: 3 residues within 4Å: Chain H: L.18, K.20 Ligands: ADP.8 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain I: G.158 Ligands: ADP.10 No protein-ligand interaction detected (PLIP) MG.11: 2 residues within 4Å: Chain J: K.20 Ligands: ADP.12 No protein-ligand interaction detected (PLIP) MG.13: 6 residues within 4Å: Chain K: D.13, N.14, G.15, S.16, K.20 Ligands: ADP.14 No protein-ligand interaction detected (PLIP) MG.15: 5 residues within 4Å: Chain L: D.13, G.15, K.20, Q.139 Ligands: ADP.16 No protein-ligand interaction detected (PLIP)

8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 16 residues within 4Å: Chain E: G.15, S.16, G.17, L.18, K.20, G.158, D.159, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.1 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:S.16, E:G.17, E:L.18, E:L.18, E:L.18, E:D.159, E:D.159, E:D.159, E:K.215, E:G.304, E:K.338 Salt bridges: E:K.20, E:K.20, E:K.338 ADP.4: 16 residues within 4Å: Chain F: G.15, S.16, G.17, L.18, K.20, G.158, D.159, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.3 14 PLIP interactions: 14 interactions with chain F Hydrogen bonds: F:S.16, F:G.17, F:L.18, F:L.18, F:L.18, F:D.159, F:D.159, F:D.159, F:K.215, F:G.304, F:K.338 Salt bridges: F:K.20, F:K.20, F:K.338 ADP.6: 17 residues within 4Å: Chain G: G.15, S.16, G.17, L.18, K.20, G.158, D.159, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.5 12 PLIP interactions: 12 interactions with chain G Hydrogen bonds: G:S.16, G:G.17, G:L.18, G:D.159, G:D.159, G:D.159, G:K.215, G:G.304, G:K.338 Salt bridges: G:K.20, G:K.20, G:K.338 ADP.8: 16 residues within 4Å: Chain H: G.15, S.16, G.17, L.18, K.20, G.158, D.159, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.7 12 PLIP interactions: 12 interactions with chain H Hydrogen bonds: H:S.16, H:G.17, H:L.18, H:D.159, H:D.159, H:D.159, H:K.215, H:G.304, H:K.338 Salt bridges: H:K.20, H:K.20, H:K.338 ADP.10: 17 residues within 4Å: Chain I: G.15, S.16, G.17, L.18, K.20, G.158, D.159, R.212, K.215, E.216, G.303, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.9 12 PLIP interactions: 12 interactions with chain I Hydrogen bonds: I:S.16, I:G.17, I:L.18, I:D.159, I:D.159, I:D.159, I:K.215, I:G.304, I:K.338 Salt bridges: I:K.20, I:K.20, I:K.338 ADP.12: 16 residues within 4Å: Chain J: G.15, S.16, G.17, L.18, K.20, G.158, D.159, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.11 13 PLIP interactions: 13 interactions with chain J Hydrogen bonds: J:S.16, J:G.17, J:L.18, J:L.18, J:Q.139, J:D.159, J:D.159, J:K.215, J:G.304, J:K.338 Salt bridges: J:K.20, J:K.20, J:K.338 ADP.14: 16 residues within 4Å: Chain K: G.15, S.16, G.17, L.18, K.20, G.158, D.159, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.13 12 PLIP interactions: 12 interactions with chain K Hydrogen bonds: K:S.16, K:G.17, K:L.18, K:D.159, K:D.159, K:D.159, K:K.215, K:G.304, K:K.338 Salt bridges: K:K.20, K:K.20, K:K.338 ADP.16: 16 residues within 4Å: Chain L: G.15, S.16, G.17, L.18, K.20, G.158, D.159, R.212, K.215, E.216, G.304, T.305, M.307, Y.308, K.338 Ligands: MG.15 13 PLIP interactions: 13 interactions with chain L Hydrogen bonds: L:S.16, L:G.17, L:L.18, L:L.18, L:D.159, L:D.159, L:D.159, L:K.215, L:G.304, L:K.338 Salt bridges: L:K.20, L:K.20, L:K.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, E.Z. et al., Salmonella effector protein SipA decorated actin filament. To Be Published

Release Date

2024-12-25

Peptides

Cell invasion protein SipA: ABCD
Actin, alpha skeletal muscle: EFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
I

E
J

F
L

G
M

H
N

I
R

J
S

K
U

L
W

Cell invasion protein SipA

Actin, alpha skeletal muscle

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