SMTL ID : 3buy.1

MHC-I in complex with peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-oligomer

Ligands

1 x LEU- SER- LEU- ARG- ASN- PRO- ILE- LEU- VAL: epitope of PB1-F2(Non-covalent)

LEU-SER-LEU-ARG-ASN-PRO-ILE-LEU-VAL.1: 28 residues within 4Å: Chain A: M.4, Y.6, Y.44, Y.58, R.61, E.62, K.65, Q.69, W.72, V.75, S.76, N.79, L.80, Y.83, Q.96, S.98, F.115, Y.122, T.142, K.145, W.146, S.149, H.154, Y.155, Y.158, E.162, W.166, Y.170 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:Y.58, A:W.72, A:W.72, A:V.75, A:L.80, A:Y.122, A:Y.155, A:Y.155, A:Y.155, A:Y.158, A:Y.158, A:W.166, A:W.166 Hydrogen bonds: A:Y.6, A:Y.44, A:E.62, A:K.65, A:Q.69, A:Q.69, A:S.76, A:N.79, A:Y.83, A:Q.96, A:Q.96, A:K.145, A:Y.155, A:Y.158, A:Y.170 Water bridges: A:S.23, A:K.65 Salt bridges: A:K.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

La Gruta, N.L. et al., Epitope-specific TCRbeta repertoire diversity imparts no functional advantage on the CD8+ T cell response to cognate viral peptides. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2008-03-25

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

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