- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 28 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 11 residues within 4Å:- Chain A: R.38, L.39, A.40, K.41, Y.83, N.84, L.85, N.87, A.88, F.89, N.90
Ligand excluded by PLIPGOL.8: 7 residues within 4Å:- Chain B: Q.203, I.205, K.207, R.222, F.223, D.224
- Chain I: I.2
Ligand excluded by PLIPGOL.9: 9 residues within 4Å:- Chain B: R.7, F.8, I.10, Q.41, R.231
- Chain R: M.210, N.211, A.213, P.215
Ligand excluded by PLIPGOL.20: 6 residues within 4Å:- Chain D: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.21: 3 residues within 4Å:- Chain B: P.22, I.28
- Chain D: R.33
Ligand excluded by PLIPGOL.22: 4 residues within 4Å:- Chain D: I.186, V.201, Q.202, I.205
Ligand excluded by PLIPGOL.30: 6 residues within 4Å:- Chain E: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.45: 11 residues within 4Å:- Chain G: R.38, L.39, A.40, K.41, Y.83, N.84, L.85, N.87, A.88, F.89, N.90
Ligand excluded by PLIPGOL.51: 7 residues within 4Å:- Chain C: I.2
- Chain H: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.52: 9 residues within 4Å:- Chain H: R.7, F.8, I.10, Q.41, R.231
- Chain X: M.210, N.211, A.213, P.215
Ligand excluded by PLIPGOL.63: 6 residues within 4Å:- Chain J: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.64: 3 residues within 4Å:- Chain H: P.22, I.28
- Chain J: R.33
Ligand excluded by PLIPGOL.65: 4 residues within 4Å:- Chain J: I.186, V.201, Q.202, I.205
Ligand excluded by PLIPGOL.73: 6 residues within 4Å:- Chain K: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.88: 11 residues within 4Å:- Chain M: R.38, L.39, A.40, K.41, Y.83, N.84, L.85, N.87, A.88, F.89, N.90
Ligand excluded by PLIPGOL.94: 7 residues within 4Å:- Chain N: Q.203, I.205, K.207, R.222, F.223, D.224
- Chain U: I.2
Ligand excluded by PLIPGOL.95: 9 residues within 4Å:- Chain F: M.210, N.211, A.213, P.215
- Chain N: R.7, F.8, I.10, Q.41, R.231
Ligand excluded by PLIPGOL.106: 6 residues within 4Å:- Chain P: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.107: 3 residues within 4Å:- Chain N: P.22, I.28
- Chain P: R.33
Ligand excluded by PLIPGOL.108: 4 residues within 4Å:- Chain P: I.186, V.201, Q.202, I.205
Ligand excluded by PLIPGOL.116: 6 residues within 4Å:- Chain Q: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.131: 11 residues within 4Å:- Chain S: R.38, L.39, A.40, K.41, Y.83, N.84, L.85, N.87, A.88, F.89, N.90
Ligand excluded by PLIPGOL.137: 7 residues within 4Å:- Chain O: I.2
- Chain T: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.138: 9 residues within 4Å:- Chain L: M.210, N.211, A.213, P.215
- Chain T: R.7, F.8, I.10, Q.41, R.231
Ligand excluded by PLIPGOL.149: 6 residues within 4Å:- Chain V: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.150: 3 residues within 4Å:- Chain T: P.22, I.28
- Chain V: R.33
Ligand excluded by PLIPGOL.151: 4 residues within 4Å:- Chain V: I.186, V.201, Q.202, I.205
Ligand excluded by PLIPGOL.159: 6 residues within 4Å:- Chain W: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIP- 60 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.3: 3 residues within 4Å:- Chain A: P.42, H.48, K.180
Ligand excluded by PLIPBME.4: 6 residues within 4Å:- Chain A: L.23, N.28, P.29
- Chain B: N.66, F.67, V.126
Ligand excluded by PLIPBME.10: 3 residues within 4Å:- Chain B: F.56, C.129, L.130
Ligand excluded by PLIPBME.11: 2 residues within 4Å:- Chain B: D.132, S.133
Ligand excluded by PLIPBME.12: 6 residues within 4Å:- Chain B: R.150, P.153
- Chain D: S.38, I.39, P.40
- Chain H: P.215
Ligand excluded by PLIPBME.17: 4 residues within 4Å:- Chain C: N.152, A.153, P.164, R.167
Ligand excluded by PLIPBME.23: 3 residues within 4Å:- Chain D: H.234, F.235
- Chain H: H.61
Ligand excluded by PLIPBME.25: 5 residues within 4Å:- Chain D: R.7, F.8, R.231
- Chain H: A.213, P.215
Ligand excluded by PLIPBME.31: 6 residues within 4Å:- Chain E: N.152, A.153, L.158, N.159, R.167, E.168
Ligand excluded by PLIPBME.32: 6 residues within 4Å:- Chain E: P.15, Y.16, R.133
- Chain F: W.149, R.150
- Ligands: 4NC.43
Ligand excluded by PLIPBME.34: 4 residues within 4Å:- Chain F: T.21, P.22, D.23, K.193
Ligand excluded by PLIPBME.35: 3 residues within 4Å:- Chain F: H.234, F.235
- Chain V: S.138
Ligand excluded by PLIPBME.36: 3 residues within 4Å:- Chain F: R.107, P.118, L.119
Ligand excluded by PLIPBME.37: 1 residues within 4Å:- Chain F: R.83
Ligand excluded by PLIPBME.38: 3 residues within 4Å:- Chain D: P.22, I.28
- Chain F: R.33
Ligand excluded by PLIPBME.46: 3 residues within 4Å:- Chain G: P.42, H.48, K.180
Ligand excluded by PLIPBME.47: 6 residues within 4Å:- Chain G: L.23, N.28, P.29
- Chain H: N.66, F.67, V.126
Ligand excluded by PLIPBME.53: 3 residues within 4Å:- Chain H: F.56, C.129, L.130
Ligand excluded by PLIPBME.54: 2 residues within 4Å:- Chain H: D.132, S.133
Ligand excluded by PLIPBME.55: 6 residues within 4Å:- Chain B: P.215
- Chain H: R.150, P.153
- Chain J: S.38, I.39, P.40
Ligand excluded by PLIPBME.60: 4 residues within 4Å:- Chain I: N.152, A.153, P.164, R.167
Ligand excluded by PLIPBME.66: 3 residues within 4Å:- Chain B: H.61
- Chain J: H.234, F.235
Ligand excluded by PLIPBME.68: 5 residues within 4Å:- Chain B: A.213, P.215
- Chain J: R.7, F.8, R.231
Ligand excluded by PLIPBME.74: 6 residues within 4Å:- Chain K: N.152, A.153, L.158, N.159, R.167, E.168
Ligand excluded by PLIPBME.75: 6 residues within 4Å:- Chain K: P.15, Y.16, R.133
- Chain L: W.149, R.150
- Ligands: 4NC.86
Ligand excluded by PLIPBME.77: 4 residues within 4Å:- Chain L: T.21, P.22, D.23, K.193
Ligand excluded by PLIPBME.78: 3 residues within 4Å:- Chain L: H.234, F.235
- Chain P: S.138
Ligand excluded by PLIPBME.79: 3 residues within 4Å:- Chain L: R.107, P.118, L.119
Ligand excluded by PLIPBME.80: 1 residues within 4Å:- Chain L: R.83
Ligand excluded by PLIPBME.81: 3 residues within 4Å:- Chain J: P.22, I.28
- Chain L: R.33
Ligand excluded by PLIPBME.89: 3 residues within 4Å:- Chain M: P.42, H.48, K.180
Ligand excluded by PLIPBME.90: 6 residues within 4Å:- Chain M: L.23, N.28, P.29
- Chain N: N.66, F.67, V.126
Ligand excluded by PLIPBME.96: 3 residues within 4Å:- Chain N: F.56, C.129, L.130
Ligand excluded by PLIPBME.97: 2 residues within 4Å:- Chain N: D.132, S.133
Ligand excluded by PLIPBME.98: 6 residues within 4Å:- Chain N: R.150, P.153
- Chain P: S.38, I.39, P.40
- Chain T: P.215
Ligand excluded by PLIPBME.103: 4 residues within 4Å:- Chain O: N.152, A.153, P.164, R.167
Ligand excluded by PLIPBME.109: 3 residues within 4Å:- Chain P: H.234, F.235
- Chain T: H.61
Ligand excluded by PLIPBME.111: 5 residues within 4Å:- Chain P: R.7, F.8, R.231
- Chain T: A.213, P.215
Ligand excluded by PLIPBME.117: 6 residues within 4Å:- Chain Q: N.152, A.153, L.158, N.159, R.167, E.168
Ligand excluded by PLIPBME.118: 6 residues within 4Å:- Chain Q: P.15, Y.16, R.133
- Chain R: W.149, R.150
- Ligands: 4NC.129
Ligand excluded by PLIPBME.120: 4 residues within 4Å:- Chain R: T.21, P.22, D.23, K.193
Ligand excluded by PLIPBME.121: 3 residues within 4Å:- Chain J: S.138
- Chain R: H.234, F.235
Ligand excluded by PLIPBME.122: 3 residues within 4Å:- Chain R: R.107, P.118, L.119
Ligand excluded by PLIPBME.123: 1 residues within 4Å:- Chain R: R.83
Ligand excluded by PLIPBME.124: 3 residues within 4Å:- Chain P: P.22, I.28
- Chain R: R.33
Ligand excluded by PLIPBME.132: 3 residues within 4Å:- Chain S: P.42, H.48, K.180
Ligand excluded by PLIPBME.133: 6 residues within 4Å:- Chain S: L.23, N.28, P.29
- Chain T: N.66, F.67, V.126
Ligand excluded by PLIPBME.139: 3 residues within 4Å:- Chain T: F.56, C.129, L.130
Ligand excluded by PLIPBME.140: 2 residues within 4Å:- Chain T: D.132, S.133
Ligand excluded by PLIPBME.141: 6 residues within 4Å:- Chain N: P.215
- Chain T: R.150, P.153
- Chain V: S.38, I.39, P.40
Ligand excluded by PLIPBME.146: 4 residues within 4Å:- Chain U: N.152, A.153, P.164, R.167
Ligand excluded by PLIPBME.152: 3 residues within 4Å:- Chain N: H.61
- Chain V: H.234, F.235
Ligand excluded by PLIPBME.154: 5 residues within 4Å:- Chain N: A.213, P.215
- Chain V: R.7, F.8, R.231
Ligand excluded by PLIPBME.160: 6 residues within 4Å:- Chain W: N.152, A.153, L.158, N.159, R.167, E.168
Ligand excluded by PLIPBME.161: 6 residues within 4Å:- Chain W: P.15, Y.16, R.133
- Chain X: W.149, R.150
- Ligands: 4NC.172
Ligand excluded by PLIPBME.163: 4 residues within 4Å:- Chain X: T.21, P.22, D.23, K.193
Ligand excluded by PLIPBME.164: 3 residues within 4Å:- Chain D: S.138
- Chain X: H.234, F.235
Ligand excluded by PLIPBME.165: 3 residues within 4Å:- Chain X: R.107, P.118, L.119
Ligand excluded by PLIPBME.166: 1 residues within 4Å:- Chain X: R.83
Ligand excluded by PLIPBME.167: 3 residues within 4Å:- Chain V: P.22, I.28
- Chain X: R.33
Ligand excluded by PLIP- 12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.5: 7 residues within 4Å:- Chain A: T.169, I.171, K.173, R.184, F.185, D.186, R.188
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:E.168, A:I.171, A:D.186, A:D.186, A:R.188
- Water bridges: A:D.186, A:R.188
TRS.18: 7 residues within 4Å:- Chain C: E.168, T.169, I.171, R.184, F.185, D.186, R.188
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:T.169, C:D.186, C:R.188, C:R.188
- Water bridges: C:E.168, C:I.171, C:G.193
TRS.39: 7 residues within 4Å:- Chain F: Q.203, I.205, A.206, K.207, R.222, F.223, D.224
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:R.222, F:D.224
TRS.48: 7 residues within 4Å:- Chain G: T.169, I.171, K.173, R.184, F.185, D.186, R.188
7 PLIP interactions:7 interactions with chain G- Hydrogen bonds: G:E.168, G:I.171, G:D.186, G:D.186, G:R.188
- Water bridges: G:D.186, G:R.188
TRS.61: 7 residues within 4Å:- Chain I: E.168, T.169, I.171, R.184, F.185, D.186, R.188
7 PLIP interactions:7 interactions with chain I- Hydrogen bonds: I:T.169, I:D.186, I:R.188, I:R.188
- Water bridges: I:E.168, I:I.171, I:G.193
TRS.82: 7 residues within 4Å:- Chain L: Q.203, I.205, A.206, K.207, R.222, F.223, D.224
2 PLIP interactions:2 interactions with chain L- Hydrogen bonds: L:R.222, L:D.224
TRS.91: 7 residues within 4Å:- Chain M: T.169, I.171, K.173, R.184, F.185, D.186, R.188
6 PLIP interactions:6 interactions with chain M- Hydrogen bonds: M:E.168, M:I.171, M:D.186, M:D.186, M:R.188
- Water bridges: M:R.188
TRS.104: 7 residues within 4Å:- Chain O: E.168, T.169, I.171, R.184, F.185, D.186, R.188
7 PLIP interactions:7 interactions with chain O- Hydrogen bonds: O:T.169, O:D.186, O:R.188, O:R.188
- Water bridges: O:E.168, O:I.171, O:G.193
TRS.125: 7 residues within 4Å:- Chain R: Q.203, I.205, A.206, K.207, R.222, F.223, D.224
2 PLIP interactions:2 interactions with chain R- Hydrogen bonds: R:R.222, R:D.224
TRS.134: 7 residues within 4Å:- Chain S: T.169, I.171, K.173, R.184, F.185, D.186, R.188
6 PLIP interactions:6 interactions with chain S- Hydrogen bonds: S:E.168, S:I.171, S:D.186, S:D.186, S:R.188
- Water bridges: S:R.188
TRS.147: 7 residues within 4Å:- Chain U: E.168, T.169, I.171, R.184, F.185, D.186, R.188
7 PLIP interactions:7 interactions with chain U- Hydrogen bonds: U:T.169, U:D.186, U:R.188, U:R.188
- Water bridges: U:E.168, U:I.171, U:G.193
TRS.168: 7 residues within 4Å:- Chain X: Q.203, I.205, A.206, K.207, R.222, F.223, D.224
2 PLIP interactions:2 interactions with chain X- Hydrogen bonds: X:R.222, X:D.224
- 20 x CO3: CARBONATE ION(Non-functional Binders)
CO3.6: 3 residues within 4Å:- Chain A: Y.56, G.60, R.188
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.60, A:R.188, A:R.188
CO3.13: 1 residues within 4Å:- Chain B: R.83
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.83
CO3.14: 3 residues within 4Å:- Chain B: T.233, H.234, F.235
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.235
CO3.27: 6 residues within 4Å:- Chain D: R.150, G.152, P.153
- Chain F: S.38, I.39, P.40
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:P.153
- Water bridges: F:S.38
CO3.33: 9 residues within 4Å:- Chain E: R.38, L.39, A.40, K.41, N.84, L.85, N.87, A.88, N.90
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:R.38, E:L.85
- Water bridges: E:N.90
CO3.49: 3 residues within 4Å:- Chain G: Y.56, G.60, R.188
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:G.60, G:R.188, G:R.188
CO3.56: 1 residues within 4Å:- Chain H: R.83
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:R.83
CO3.57: 3 residues within 4Å:- Chain H: T.233, H.234, F.235
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:F.235
CO3.70: 6 residues within 4Å:- Chain J: R.150, G.152, P.153
- Chain L: S.38, I.39, P.40
2 PLIP interactions:1 interactions with chain J, 1 interactions with chain L- Hydrogen bonds: J:P.153
- Water bridges: L:S.38
CO3.76: 9 residues within 4Å:- Chain K: R.38, L.39, A.40, K.41, N.84, L.85, N.87, A.88, N.90
3 PLIP interactions:3 interactions with chain K- Hydrogen bonds: K:R.38, K:L.85
- Water bridges: K:N.90
CO3.92: 3 residues within 4Å:- Chain M: Y.56, G.60, R.188
3 PLIP interactions:3 interactions with chain M- Hydrogen bonds: M:G.60, M:R.188, M:R.188
CO3.99: 1 residues within 4Å:- Chain N: R.83
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:R.83
CO3.100: 3 residues within 4Å:- Chain N: T.233, H.234, F.235
2 PLIP interactions:2 interactions with chain N- Hydrogen bonds: N:F.235
- Water bridges: N:T.233
CO3.113: 6 residues within 4Å:- Chain P: R.150, G.152, P.153
- Chain R: S.38, I.39, P.40
2 PLIP interactions:1 interactions with chain R, 1 interactions with chain P- Water bridges: R:S.38
- Hydrogen bonds: P:P.153
CO3.119: 9 residues within 4Å:- Chain Q: R.38, L.39, A.40, K.41, N.84, L.85, N.87, A.88, N.90
3 PLIP interactions:3 interactions with chain Q- Hydrogen bonds: Q:R.38, Q:L.85
- Water bridges: Q:N.90
CO3.135: 3 residues within 4Å:- Chain S: Y.56, G.60, R.188
3 PLIP interactions:3 interactions with chain S- Hydrogen bonds: S:G.60, S:R.188, S:R.188
CO3.142: 1 residues within 4Å:- Chain T: R.83
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:R.83
CO3.143: 3 residues within 4Å:- Chain T: T.233, H.234, F.235
2 PLIP interactions:2 interactions with chain T- Hydrogen bonds: T:F.235
- Water bridges: T:T.233
CO3.156: 6 residues within 4Å:- Chain V: R.150, G.152, P.153
- Chain X: S.38, I.39, P.40
2 PLIP interactions:1 interactions with chain V, 1 interactions with chain X- Hydrogen bonds: V:P.153
- Water bridges: X:S.38
CO3.162: 9 residues within 4Å:- Chain W: R.38, L.39, A.40, K.41, N.84, L.85, N.87, A.88, N.90
3 PLIP interactions:3 interactions with chain W- Hydrogen bonds: W:R.38, W:L.85
- Water bridges: W:N.90
- 12 x FE: FE (III) ION(Non-covalent)
FE.7: 4 residues within 4Å:- Chain B: Y.108, H.160, H.162
- Ligands: 4NC.15
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:Y.108, B:H.160, B:H.162, H2O.14
FE.24: 4 residues within 4Å:- Chain D: Y.108, H.160, H.162
- Ligands: 4NC.26
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:Y.108, D:H.160, D:H.162, H2O.28
FE.42: 4 residues within 4Å:- Chain F: Y.108, H.160, H.162
- Ligands: 4NC.43
4 PLIP interactions:3 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:Y.108, F:H.160, F:H.162, H2O.40
FE.50: 4 residues within 4Å:- Chain H: Y.108, H.160, H.162
- Ligands: 4NC.58
4 PLIP interactions:3 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: H:Y.108, H:H.160, H:H.162, H2O.55
FE.67: 4 residues within 4Å:- Chain J: Y.108, H.160, H.162
- Ligands: 4NC.69
4 PLIP interactions:3 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:Y.108, J:H.160, J:H.162, H2O.69
FE.85: 4 residues within 4Å:- Chain L: Y.108, H.160, H.162
- Ligands: 4NC.86
4 PLIP interactions:3 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: L:Y.108, L:H.160, L:H.162, H2O.81
FE.93: 4 residues within 4Å:- Chain N: Y.108, H.160, H.162
- Ligands: 4NC.101
4 PLIP interactions:3 interactions with chain N, 1 Ligand-Water interactions- Metal complexes: N:Y.108, N:H.160, N:H.162, H2O.96
FE.110: 4 residues within 4Å:- Chain P: Y.108, H.160, H.162
- Ligands: 4NC.112
4 PLIP interactions:3 interactions with chain P, 1 Ligand-Water interactions- Metal complexes: P:Y.108, P:H.160, P:H.162, H2O.110
FE.128: 4 residues within 4Å:- Chain R: Y.108, H.160, H.162
- Ligands: 4NC.129
4 PLIP interactions:3 interactions with chain R, 1 Ligand-Water interactions- Metal complexes: R:Y.108, R:H.160, R:H.162, H2O.122
FE.136: 4 residues within 4Å:- Chain T: Y.108, H.160, H.162
- Ligands: 4NC.144
4 PLIP interactions:3 interactions with chain T, 1 Ligand-Water interactions- Metal complexes: T:Y.108, T:H.160, T:H.162, H2O.137
FE.153: 4 residues within 4Å:- Chain V: Y.108, H.160, H.162
- Ligands: 4NC.155
4 PLIP interactions:3 interactions with chain V, 1 Ligand-Water interactions- Metal complexes: V:Y.108, V:H.160, V:H.162, H2O.151
FE.171: 4 residues within 4Å:- Chain X: Y.108, H.160, H.162
- Ligands: 4NC.172
4 PLIP interactions:3 interactions with chain X, 1 Ligand-Water interactions- Metal complexes: X:Y.108, X:H.160, X:H.162, H2O.163
- 16 x 4NC: 4-NITROCATECHOL(Non-covalent)
4NC.15: 14 residues within 4Å:- Chain A: T.12, G.14, P.15, R.133
- Chain B: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.7
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:W.149, B:R.157, B:I.191, A:P.15
- Hydrogen bonds: B:R.157, B:Q.177
4NC.26: 14 residues within 4Å:- Chain C: T.12, G.14, P.15, R.133
- Chain D: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.24
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:W.149, D:R.157, D:I.191
- Hydrogen bonds: D:R.157, D:Q.177
4NC.41: 7 residues within 4Å:- Chain F: I.186, P.187, K.193, P.198, V.201, Q.202, I.205
4 PLIP interactions:4 interactions with chain F- Hydrophobic interactions: F:I.186, F:V.201, F:I.205
- Hydrogen bonds: F:Q.202
4NC.43: 15 residues within 4Å:- Chain E: T.12, G.14, P.15, R.133
- Chain F: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: BME.32, FE.42
6 PLIP interactions:5 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: F:W.149, F:R.157, F:I.191, E:P.15
- Hydrogen bonds: F:R.157, F:Q.177
4NC.58: 14 residues within 4Å:- Chain G: T.12, G.14, P.15, R.133
- Chain H: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.50
6 PLIP interactions:5 interactions with chain H, 1 interactions with chain G- Hydrophobic interactions: H:W.149, H:R.157, H:I.191, G:P.15
- Hydrogen bonds: H:R.157, H:Q.177
4NC.69: 14 residues within 4Å:- Chain I: T.12, G.14, P.15, R.133
- Chain J: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.67
5 PLIP interactions:5 interactions with chain J- Hydrophobic interactions: J:W.149, J:R.157, J:I.191
- Hydrogen bonds: J:R.157, J:Q.177
4NC.84: 7 residues within 4Å:- Chain L: I.186, P.187, K.193, P.198, V.201, Q.202, I.205
4 PLIP interactions:4 interactions with chain L- Hydrophobic interactions: L:I.186, L:V.201, L:I.205
- Hydrogen bonds: L:Q.202
4NC.86: 15 residues within 4Å:- Chain K: T.12, G.14, P.15, R.133
- Chain L: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: BME.75, FE.85
6 PLIP interactions:5 interactions with chain L, 1 interactions with chain K- Hydrophobic interactions: L:W.149, L:R.157, L:I.191, K:P.15
- Hydrogen bonds: L:R.157, L:Q.177
4NC.101: 14 residues within 4Å:- Chain M: T.12, G.14, P.15, R.133
- Chain N: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.93
6 PLIP interactions:5 interactions with chain N, 1 interactions with chain M- Hydrophobic interactions: N:W.149, N:R.157, N:I.191, M:P.15
- Hydrogen bonds: N:R.157, N:Q.177
4NC.112: 14 residues within 4Å:- Chain O: T.12, G.14, P.15, R.133
- Chain P: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.110
5 PLIP interactions:5 interactions with chain P- Hydrophobic interactions: P:W.149, P:R.157, P:I.191
- Hydrogen bonds: P:R.157, P:Q.177
4NC.127: 7 residues within 4Å:- Chain R: I.186, P.187, K.193, P.198, V.201, Q.202, I.205
4 PLIP interactions:4 interactions with chain R- Hydrophobic interactions: R:I.186, R:V.201, R:I.205
- Hydrogen bonds: R:Q.202
4NC.129: 15 residues within 4Å:- Chain Q: T.12, G.14, P.15, R.133
- Chain R: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: BME.118, FE.128
6 PLIP interactions:5 interactions with chain R, 1 interactions with chain Q- Hydrophobic interactions: R:W.149, R:R.157, R:I.191, Q:P.15
- Hydrogen bonds: R:R.157, R:Q.177
4NC.144: 14 residues within 4Å:- Chain S: T.12, G.14, P.15, R.133
- Chain T: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.136
6 PLIP interactions:5 interactions with chain T, 1 interactions with chain S- Hydrophobic interactions: T:W.149, T:R.157, T:I.191, S:P.15
- Hydrogen bonds: T:R.157, T:Q.177
4NC.155: 14 residues within 4Å:- Chain U: T.12, G.14, P.15, R.133
- Chain V: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.153
5 PLIP interactions:5 interactions with chain V- Hydrophobic interactions: V:W.149, V:R.157, V:I.191
- Hydrogen bonds: V:R.157, V:Q.177
4NC.170: 7 residues within 4Å:- Chain X: I.186, P.187, K.193, P.198, V.201, Q.202, I.205
4 PLIP interactions:4 interactions with chain X- Hydrophobic interactions: X:I.186, X:V.201, X:I.205
- Hydrogen bonds: X:Q.202
4NC.172: 15 residues within 4Å:- Chain W: T.12, G.14, P.15, R.133
- Chain X: Y.24, Y.108, H.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: BME.161, FE.171
6 PLIP interactions:5 interactions with chain X, 1 interactions with chain W- Hydrophobic interactions: X:W.149, X:R.157, X:I.191, W:P.15
- Hydrogen bonds: X:R.157, X:Q.177
- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.19: 3 residues within 4Å:- Chain C: H.61, L.62, R.64
Ligand excluded by PLIPCL.28: 4 residues within 4Å:- Chain D: A.58, H.59, H.61, D.62
Ligand excluded by PLIPCL.40: 2 residues within 4Å:- Chain F: D.132, S.133
Ligand excluded by PLIPCL.62: 3 residues within 4Å:- Chain I: H.61, L.62, R.64
Ligand excluded by PLIPCL.71: 4 residues within 4Å:- Chain J: A.58, H.59, H.61, D.62
Ligand excluded by PLIPCL.83: 2 residues within 4Å:- Chain L: D.132, S.133
Ligand excluded by PLIPCL.105: 3 residues within 4Å:- Chain O: H.61, L.62, R.64
Ligand excluded by PLIPCL.114: 4 residues within 4Å:- Chain P: A.58, H.59, H.61, D.62
Ligand excluded by PLIPCL.126: 2 residues within 4Å:- Chain R: D.132, S.133
Ligand excluded by PLIPCL.148: 3 residues within 4Å:- Chain U: H.61, L.62, R.64
Ligand excluded by PLIPCL.157: 4 residues within 4Å:- Chain V: A.58, H.59, H.61, D.62
Ligand excluded by PLIPCL.169: 2 residues within 4Å:- Chain X: D.132, S.133
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Purpero, V.M. et al., Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis. To be Published (2010)
- Release Date
- 2011-03-09
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ACEGIKMOQSUW
Protocatechuate 3,4-dioxygenase beta chain: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
AI
BK
CM
AO
BQ
CS
AU
BW
CB
MD
NF
OH
MJ
NL
ON
MP
NR
OT
MV
NX
O
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 28 x GOL: GLYCEROL(Non-functional Binders)
- 60 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 20 x CO3: CARBONATE ION(Non-functional Binders)
- 12 x FE: FE (III) ION(Non-covalent)
- 16 x 4NC: 4-NITROCATECHOL(Non-covalent)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Purpero, V.M. et al., Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis. To be Published (2010)
- Release Date
- 2011-03-09
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ACEGIKMOQSUW
Protocatechuate 3,4-dioxygenase beta chain: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
AI
BK
CM
AO
BQ
CS
AU
BW
CB
MD
NF
OH
MJ
NL
ON
MP
NR
OT
MV
NX
O