- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.54 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 48 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 9 residues within 4Å:- Chain A: E.168, T.169, L.170, I.171, A.172, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.4: 7 residues within 4Å:- Chain B: E.168, T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.6: 6 residues within 4Å:- Chain C: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.11: 6 residues within 4Å:- Chain D: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.25: 9 residues within 4Å:- Chain G: E.168, T.169, L.170, I.171, A.172, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.27: 7 residues within 4Å:- Chain H: E.168, T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.29: 6 residues within 4Å:- Chain I: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.34: 6 residues within 4Å:- Chain J: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.48: 9 residues within 4Å:- Chain M: E.168, T.169, L.170, I.171, A.172, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.50: 7 residues within 4Å:- Chain N: E.168, T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.52: 6 residues within 4Å:- Chain O: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.57: 6 residues within 4Å:- Chain P: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.71: 9 residues within 4Å:- Chain S: E.168, T.169, L.170, I.171, A.172, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.73: 7 residues within 4Å:- Chain T: E.168, T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.75: 6 residues within 4Å:- Chain U: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.80: 6 residues within 4Å:- Chain V: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIP- 16 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: N.37, T.105, H.107
Ligand excluded by PLIPSO4.5: 4 residues within 4Å:- Chain B: N.37, R.38, T.105, H.107
Ligand excluded by PLIPSO4.7: 3 residues within 4Å:- Chain C: N.37, T.105, H.107
Ligand excluded by PLIPSO4.12: 1 residues within 4Å:- Chain D: R.83
Ligand excluded by PLIPSO4.26: 3 residues within 4Å:- Chain G: N.37, T.105, H.107
Ligand excluded by PLIPSO4.28: 4 residues within 4Å:- Chain H: N.37, R.38, T.105, H.107
Ligand excluded by PLIPSO4.30: 3 residues within 4Å:- Chain I: N.37, T.105, H.107
Ligand excluded by PLIPSO4.35: 1 residues within 4Å:- Chain J: R.83
Ligand excluded by PLIPSO4.49: 3 residues within 4Å:- Chain M: N.37, T.105, H.107
Ligand excluded by PLIPSO4.51: 4 residues within 4Å:- Chain N: N.37, R.38, T.105, H.107
Ligand excluded by PLIPSO4.53: 3 residues within 4Å:- Chain O: N.37, T.105, H.107
Ligand excluded by PLIPSO4.58: 1 residues within 4Å:- Chain P: R.83
Ligand excluded by PLIPSO4.72: 3 residues within 4Å:- Chain S: N.37, T.105, H.107
Ligand excluded by PLIPSO4.74: 4 residues within 4Å:- Chain T: N.37, R.38, T.105, H.107
Ligand excluded by PLIPSO4.76: 3 residues within 4Å:- Chain U: N.37, T.105, H.107
Ligand excluded by PLIPSO4.81: 1 residues within 4Å:- Chain V: R.83
Ligand excluded by PLIP- 12 x FE: FE (III) ION(Non-covalent)
FE.15: 5 residues within 4Å:- Chain D: Y.108, R.157, H.160, Y.162
- Ligands: BME.8
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:Y.108, D:H.160, D:Y.162, H2O.37
FE.19: 5 residues within 4Å:- Chain E: Y.108, R.157, H.160, Y.162
- Ligands: BME.16
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:Y.108, E:H.160, E:Y.162, H2O.48
FE.23: 5 residues within 4Å:- Chain F: Y.108, R.157, H.160, Y.162
- Ligands: BME.20
4 PLIP interactions:3 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:Y.108, F:H.160, F:Y.162, H2O.59
FE.38: 5 residues within 4Å:- Chain J: Y.108, R.157, H.160, Y.162
- Ligands: BME.31
4 PLIP interactions:3 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:Y.108, J:H.160, J:Y.162, H2O.95
FE.42: 5 residues within 4Å:- Chain K: Y.108, R.157, H.160, Y.162
- Ligands: BME.39
4 PLIP interactions:3 interactions with chain K, 1 Ligand-Water interactions- Metal complexes: K:Y.108, K:H.160, K:Y.162, H2O.106
FE.46: 5 residues within 4Å:- Chain L: Y.108, R.157, H.160, Y.162
- Ligands: BME.43
4 PLIP interactions:3 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: L:Y.108, L:H.160, L:Y.162, H2O.117
FE.61: 5 residues within 4Å:- Chain P: Y.108, R.157, H.160, Y.162
- Ligands: BME.54
4 PLIP interactions:3 interactions with chain P, 1 Ligand-Water interactions- Metal complexes: P:Y.108, P:H.160, P:Y.162, H2O.153
FE.65: 5 residues within 4Å:- Chain Q: Y.108, R.157, H.160, Y.162
- Ligands: BME.62
4 PLIP interactions:3 interactions with chain Q, 1 Ligand-Water interactions- Metal complexes: Q:Y.108, Q:H.160, Q:Y.162, H2O.164
FE.69: 5 residues within 4Å:- Chain R: Y.108, R.157, H.160, Y.162
- Ligands: BME.66
4 PLIP interactions:3 interactions with chain R, 1 Ligand-Water interactions- Metal complexes: R:Y.108, R:H.160, R:Y.162, H2O.175
FE.84: 5 residues within 4Å:- Chain V: Y.108, R.157, H.160, Y.162
- Ligands: BME.77
4 PLIP interactions:3 interactions with chain V, 1 Ligand-Water interactions- Metal complexes: V:Y.108, V:H.160, V:Y.162, H2O.211
FE.88: 5 residues within 4Å:- Chain W: Y.108, R.157, H.160, Y.162
- Ligands: BME.85
4 PLIP interactions:3 interactions with chain W, 1 Ligand-Water interactions- Metal complexes: W:Y.108, W:H.160, W:Y.162, H2O.223
FE.92: 5 residues within 4Å:- Chain X: Y.108, R.157, H.160, Y.162
- Ligands: BME.89
4 PLIP interactions:3 interactions with chain X, 1 Ligand-Water interactions- Metal complexes: X:Y.108, X:H.160, X:Y.162, H2O.233
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Purpero, V.M. et al., Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase. To be Published
- Release Date
- 2012-08-01
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABCGHIMNOSTU
Protocatechuate 3,4-dioxygenase beta chain: DEFJKLPQRVWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CG
AH
BI
CM
AN
BO
CS
AT
BU
CD
ME
NF
OJ
MK
NL
OP
MQ
NR
OV
MW
NX
O
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.54 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 48 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 12 x FE: FE (III) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Purpero, V.M. et al., Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase. To be Published
- Release Date
- 2012-08-01
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABCGHIMNOSTU
Protocatechuate 3,4-dioxygenase beta chain: DEFJKLPQRVWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CG
AH
BI
CM
AN
BO
CS
AT
BU
CD
ME
NF
OJ
MK
NL
OP
MQ
NR
OV
MW
NX
O