- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 32 x SO4: SULFATE ION(Non-functional Binders)
- 24 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 6 residues within 4Å:- Chain A: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.5: 7 residues within 4Å:- Chain B: Q.203, I.205, K.207, R.222, F.223, D.224
- Chain I: I.2
Ligand excluded by PLIPGOL.12: 6 residues within 4Å:- Chain C: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.16: 8 residues within 4Å:- Chain D: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224
- Chain W: I.2
Ligand excluded by PLIPGOL.20: 6 residues within 4Å:- Chain E: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.24: 7 residues within 4Å:- Chain F: Q.203, I.205, K.207, R.222, F.223, D.224
- Chain M: I.2
Ligand excluded by PLIPGOL.31: 6 residues within 4Å:- Chain G: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.34: 7 residues within 4Å:- Chain C: I.2
- Chain H: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.41: 6 residues within 4Å:- Chain I: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.45: 8 residues within 4Å:- Chain J: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224
- Chain Q: I.2
Ligand excluded by PLIPGOL.49: 6 residues within 4Å:- Chain K: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.53: 7 residues within 4Å:- Chain L: Q.203, I.205, K.207, R.222, F.223, D.224
- Chain S: I.2
Ligand excluded by PLIPGOL.60: 6 residues within 4Å:- Chain M: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.63: 7 residues within 4Å:- Chain N: Q.203, I.205, K.207, R.222, F.223, D.224
- Chain U: I.2
Ligand excluded by PLIPGOL.70: 6 residues within 4Å:- Chain O: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.74: 8 residues within 4Å:- Chain K: I.2
- Chain P: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.78: 6 residues within 4Å:- Chain Q: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.82: 7 residues within 4Å:- Chain A: I.2
- Chain R: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.89: 6 residues within 4Å:- Chain S: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.92: 7 residues within 4Å:- Chain O: I.2
- Chain T: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.99: 6 residues within 4Å:- Chain U: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.103: 8 residues within 4Å:- Chain E: I.2
- Chain V: Q.202, Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIPGOL.107: 6 residues within 4Å:- Chain W: T.169, I.171, R.184, F.185, D.186, R.188
Ligand excluded by PLIPGOL.111: 7 residues within 4Å:- Chain G: I.2
- Chain X: Q.203, I.205, K.207, R.222, F.223, D.224
Ligand excluded by PLIP- 12 x FE: FE (III) ION(Non-covalent)
FE.4: 6 residues within 4Å:- Chain A: T.12, G.14
- Chain B: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:Y.162, H2O.7, H2O.17
FE.13: 6 residues within 4Å:- Chain C: T.12, G.14
- Chain D: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:Y.162, H2O.25, H2O.34
FE.23: 6 residues within 4Å:- Chain E: T.12, G.14
- Chain F: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:Y.162, H2O.42, H2O.52
FE.33: 6 residues within 4Å:- Chain G: T.12, G.14
- Chain H: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain H, 2 Ligand-Water interactions- Metal complexes: H:Y.162, H2O.59, H2O.69
FE.42: 6 residues within 4Å:- Chain I: T.12, G.14
- Chain J: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain J, 2 Ligand-Water interactions- Metal complexes: J:Y.162, H2O.77, H2O.87
FE.52: 6 residues within 4Å:- Chain K: T.12, G.14
- Chain L: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain L, 2 Ligand-Water interactions- Metal complexes: L:Y.162, H2O.94, H2O.104
FE.62: 6 residues within 4Å:- Chain M: T.12, G.14
- Chain N: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain N, 2 Ligand-Water interactions- Metal complexes: N:Y.162, H2O.112, H2O.122
FE.71: 6 residues within 4Å:- Chain O: T.12, G.14
- Chain P: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain P, 2 Ligand-Water interactions- Metal complexes: P:Y.162, H2O.129, H2O.139
FE.81: 6 residues within 4Å:- Chain Q: T.12, G.14
- Chain R: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain R, 2 Ligand-Water interactions- Metal complexes: R:Y.162, H2O.147, H2O.156
FE.91: 6 residues within 4Å:- Chain S: T.12, G.14
- Chain T: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain T, 2 Ligand-Water interactions- Metal complexes: T:Y.162, H2O.164, H2O.174
FE.100: 6 residues within 4Å:- Chain U: T.12, G.14
- Chain V: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain V, 2 Ligand-Water interactions- Metal complexes: V:Y.162, H2O.182, H2O.191
FE.110: 6 residues within 4Å:- Chain W: T.12, G.14
- Chain X: R.157, Y.162, Q.177, I.191
3 PLIP interactions:1 interactions with chain X, 2 Ligand-Water interactions- Metal complexes: X:Y.162, H2O.199, H2O.208
- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 2 residues within 4Å:- Chain B: R.114, R.150
Ligand excluded by PLIPCL.9: 3 residues within 4Å:- Chain B: R.107, P.118, L.119
Ligand excluded by PLIPCL.28: 1 residues within 4Å:- Chain F: R.83
Ligand excluded by PLIPCL.35: 2 residues within 4Å:- Chain H: R.114, R.150
Ligand excluded by PLIPCL.38: 3 residues within 4Å:- Chain H: R.107, P.118, L.119
Ligand excluded by PLIPCL.57: 1 residues within 4Å:- Chain L: R.83
Ligand excluded by PLIPCL.64: 2 residues within 4Å:- Chain N: R.114, R.150
Ligand excluded by PLIPCL.67: 3 residues within 4Å:- Chain N: R.107, P.118, L.119
Ligand excluded by PLIPCL.86: 1 residues within 4Å:- Chain R: R.83
Ligand excluded by PLIPCL.93: 2 residues within 4Å:- Chain T: R.114, R.150
Ligand excluded by PLIPCL.96: 3 residues within 4Å:- Chain T: R.107, P.118, L.119
Ligand excluded by PLIPCL.115: 1 residues within 4Å:- Chain X: R.83
Ligand excluded by PLIP- 36 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.7: 2 residues within 4Å:- Chain B: R.109, P.121
Ligand excluded by PLIPBME.8: 3 residues within 4Å:- Chain B: H.234, F.235
- Chain R: H.61
Ligand excluded by PLIPBME.15: 4 residues within 4Å:- Chain D: T.233, H.234, F.235, E.236
Ligand excluded by PLIPBME.17: 3 residues within 4Å:- Chain D: R.107, P.118, L.119
Ligand excluded by PLIPBME.21: 3 residues within 4Å:- Chain E: P.164, R.167, E.168
Ligand excluded by PLIPBME.22: 4 residues within 4Å:- Chain E: L.23, N.28, P.29
- Chain F: F.67
Ligand excluded by PLIPBME.25: 3 residues within 4Å:- Chain F: R.107, P.118, L.119
Ligand excluded by PLIPBME.26: 4 residues within 4Å:- Chain F: T.21, P.22, D.23, K.193
Ligand excluded by PLIPBME.29: 4 residues within 4Å:- Chain F: H.234, F.235
- Chain V: H.61, S.138
Ligand excluded by PLIPBME.36: 2 residues within 4Å:- Chain H: R.109, P.121
Ligand excluded by PLIPBME.37: 3 residues within 4Å:- Chain H: H.234, F.235
- Chain X: H.61
Ligand excluded by PLIPBME.44: 4 residues within 4Å:- Chain J: T.233, H.234, F.235, E.236
Ligand excluded by PLIPBME.46: 3 residues within 4Å:- Chain J: R.107, P.118, L.119
Ligand excluded by PLIPBME.50: 3 residues within 4Å:- Chain K: P.164, R.167, E.168
Ligand excluded by PLIPBME.51: 4 residues within 4Å:- Chain K: L.23, N.28, P.29
- Chain L: F.67
Ligand excluded by PLIPBME.54: 3 residues within 4Å:- Chain L: R.107, P.118, L.119
Ligand excluded by PLIPBME.55: 4 residues within 4Å:- Chain L: T.21, P.22, D.23, K.193
Ligand excluded by PLIPBME.58: 4 residues within 4Å:- Chain L: H.234, F.235
- Chain P: H.61, S.138
Ligand excluded by PLIPBME.65: 2 residues within 4Å:- Chain N: R.109, P.121
Ligand excluded by PLIPBME.66: 3 residues within 4Å:- Chain F: H.61
- Chain N: H.234, F.235
Ligand excluded by PLIPBME.73: 4 residues within 4Å:- Chain P: T.233, H.234, F.235, E.236
Ligand excluded by PLIPBME.75: 3 residues within 4Å:- Chain P: R.107, P.118, L.119
Ligand excluded by PLIPBME.79: 3 residues within 4Å:- Chain Q: P.164, R.167, E.168
Ligand excluded by PLIPBME.80: 4 residues within 4Å:- Chain Q: L.23, N.28, P.29
- Chain R: F.67
Ligand excluded by PLIPBME.83: 3 residues within 4Å:- Chain R: R.107, P.118, L.119
Ligand excluded by PLIPBME.84: 4 residues within 4Å:- Chain R: T.21, P.22, D.23, K.193
Ligand excluded by PLIPBME.87: 4 residues within 4Å:- Chain J: H.61, S.138
- Chain R: H.234, F.235
Ligand excluded by PLIPBME.94: 2 residues within 4Å:- Chain T: R.109, P.121
Ligand excluded by PLIPBME.95: 3 residues within 4Å:- Chain L: H.61
- Chain T: H.234, F.235
Ligand excluded by PLIPBME.102: 4 residues within 4Å:- Chain V: T.233, H.234, F.235, E.236
Ligand excluded by PLIPBME.104: 3 residues within 4Å:- Chain V: R.107, P.118, L.119
Ligand excluded by PLIPBME.108: 3 residues within 4Å:- Chain W: P.164, R.167, E.168
Ligand excluded by PLIPBME.109: 4 residues within 4Å:- Chain W: L.23, N.28, P.29
- Chain X: F.67
Ligand excluded by PLIPBME.112: 3 residues within 4Å:- Chain X: R.107, P.118, L.119
Ligand excluded by PLIPBME.113: 4 residues within 4Å:- Chain X: T.21, P.22, D.23, K.193
Ligand excluded by PLIPBME.116: 4 residues within 4Å:- Chain D: H.61, S.138
- Chain X: H.234, F.235
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Purpero, V.M. et al., Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase. To be Published
- Release Date
- 2011-04-27
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ACEGIKMOQSUW
Protocatechuate 3,4-dioxygenase beta chain: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
AI
BK
CM
AO
BQ
CS
AU
BW
CB
MD
NF
OH
MJ
NL
ON
MP
NR
OT
MV
NX
O
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.74 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 32 x SO4: SULFATE ION(Non-functional Binders)
- 24 x GOL: GLYCEROL(Non-functional Binders)
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- 36 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Purpero, V.M. et al., Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase. To be Published
- Release Date
- 2011-04-27
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ACEGIKMOQSUW
Protocatechuate 3,4-dioxygenase beta chain: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
AI
BK
CM
AO
BQ
CS
AU
BW
CB
MD
NF
OH
MJ
NL
ON
MP
NR
OT
MV
NX
O