- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.2: 5 residues within 4Å:- Chain B: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.138
BME.5: 4 residues within 4Å:- Chain D: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.138
BME.8: 4 residues within 4Å:- Chain F: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:S.138
BME.11: 4 residues within 4Å:- Chain H: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:S.138
BME.14: 4 residues within 4Å:- Chain J: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain J- Hydrogen bonds: J:S.138
BME.17: 4 residues within 4Å:- Chain L: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain L- Hydrogen bonds: L:S.138
BME.20: 5 residues within 4Å:- Chain N: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:S.138
BME.23: 4 residues within 4Å:- Chain P: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:S.138
BME.26: 4 residues within 4Å:- Chain R: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain R- Hydrogen bonds: R:S.138
BME.29: 4 residues within 4Å:- Chain T: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:S.138
BME.32: 4 residues within 4Å:- Chain V: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain V- Hydrogen bonds: V:S.138
BME.35: 4 residues within 4Å:- Chain X: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain X- Hydrogen bonds: X:S.138
- 12 x NNO: 6-HYDROXYISONICOTINIC ACID N-OXIDE(Non-covalent)
NNO.3: 14 residues within 4Å:- Chain A: T.12, G.14, P.15, R.133
- Chain B: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.1
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.147, B:W.149, B:I.191, A:P.15
- Hydrogen bonds: B:R.157, B:Q.177
NNO.6: 14 residues within 4Å:- Chain C: T.12, G.14, P.15, R.133
- Chain D: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.4
8 PLIP interactions:6 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:Y.147, D:W.149, D:I.191, C:P.15
- Hydrogen bonds: D:Y.24, D:R.157, D:Q.177
- Water bridges: C:R.133
NNO.9: 14 residues within 4Å:- Chain E: T.12, G.14, P.15, R.133
- Chain F: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.7
5 PLIP interactions:4 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: F:Y.147, F:W.149, E:P.15
- Hydrogen bonds: F:R.157, F:Q.177
NNO.12: 13 residues within 4Å:- Chain G: G.14, P.15, R.133
- Chain H: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.10
5 PLIP interactions:1 interactions with chain G, 4 interactions with chain H- Hydrophobic interactions: G:P.15, H:Y.147, H:W.149
- Hydrogen bonds: H:R.157, H:Q.177
NNO.15: 13 residues within 4Å:- Chain I: G.14, P.15, R.133
- Chain J: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.13
7 PLIP interactions:6 interactions with chain J, 1 interactions with chain I- Hydrophobic interactions: J:Y.147, J:W.149, J:I.191, I:P.15
- Hydrogen bonds: J:Y.24, J:R.157, J:Q.177
NNO.18: 13 residues within 4Å:- Chain K: T.12, G.14, P.15, R.133
- Chain L: Y.24, Y.108, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.16
5 PLIP interactions:4 interactions with chain L, 1 interactions with chain K- Hydrophobic interactions: L:W.149, L:I.191, K:P.15
- Hydrogen bonds: L:R.157, L:Q.177
NNO.21: 14 residues within 4Å:- Chain M: T.12, G.14, P.15, R.133
- Chain N: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.19
7 PLIP interactions:6 interactions with chain N, 1 interactions with chain M- Hydrophobic interactions: N:Y.147, N:W.149, N:I.191, M:P.15
- Hydrogen bonds: N:Y.24, N:R.157, N:Q.177
NNO.24: 14 residues within 4Å:- Chain O: T.12, G.14, P.15, R.133
- Chain P: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.22
7 PLIP interactions:2 interactions with chain O, 5 interactions with chain P- Hydrophobic interactions: O:P.15, P:Y.147, P:W.149, P:I.191
- Water bridges: O:R.133
- Hydrogen bonds: P:R.157, P:Q.177
NNO.27: 14 residues within 4Å:- Chain Q: T.12, G.14, P.15, R.133
- Chain R: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.25
6 PLIP interactions:5 interactions with chain R, 1 interactions with chain Q- Hydrophobic interactions: R:Y.147, R:W.149, Q:P.15
- Hydrogen bonds: R:Y.24, R:R.157, R:Q.177
NNO.30: 13 residues within 4Å:- Chain S: G.14, P.15, R.133
- Chain T: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.28
6 PLIP interactions:5 interactions with chain T, 1 interactions with chain S- Hydrophobic interactions: T:Y.147, T:W.149, S:P.15
- Hydrogen bonds: T:Y.24, T:R.157, T:Q.177
NNO.33: 13 residues within 4Å:- Chain U: G.14, P.15, R.133
- Chain V: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.31
6 PLIP interactions:5 interactions with chain V, 1 interactions with chain U- Hydrophobic interactions: V:Y.147, V:W.149, V:I.191, U:P.15
- Hydrogen bonds: V:R.157, V:Q.177
NNO.36: 13 residues within 4Å:- Chain W: T.12, G.14, P.15, R.133
- Chain X: Y.24, Y.108, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.34
6 PLIP interactions:5 interactions with chain X, 1 interactions with chain W- Hydrophobic interactions: X:W.149, X:I.191, W:P.15
- Hydrogen bonds: X:Y.24, X:R.157, X:Q.177
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding. Biochemistry (1997)
- Release Date
- 1998-01-21
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 12 x NNO: 6-HYDROXYISONICOTINIC ACID N-OXIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding. Biochemistry (1997)
- Release Date
- 1998-01-21
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R