- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.2: 4 residues within 4Å:- Chain B: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.138
BME.6: 4 residues within 4Å:- Chain D: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.138
BME.10: 4 residues within 4Å:- Chain F: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:S.138
BME.14: 4 residues within 4Å:- Chain H: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:S.138
BME.18: 4 residues within 4Å:- Chain J: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain J- Hydrogen bonds: J:S.138
BME.22: 4 residues within 4Å:- Chain L: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain L- Hydrogen bonds: L:S.138
BME.26: 4 residues within 4Å:- Chain N: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:S.138
BME.30: 4 residues within 4Å:- Chain P: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:S.138
BME.34: 4 residues within 4Å:- Chain R: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain R- Hydrogen bonds: R:S.138
BME.38: 4 residues within 4Å:- Chain T: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:S.138
BME.42: 4 residues within 4Å:- Chain V: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain V- Hydrogen bonds: V:S.138
BME.46: 4 residues within 4Å:- Chain X: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain X- Hydrogen bonds: X:S.138
- 24 x 3HB: 3-HYDROXYBENZOIC ACID(Non-covalent)
3HB.3: 11 residues within 4Å:- Chain A: G.14, P.15, R.133
- Chain B: Y.24, Y.147, W.149, R.157, H.162, Q.177, I.191
- Ligands: FE.1
7 PLIP interactions:1 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:P.15, B:Y.147, B:W.149, B:R.157, B:I.191
- Hydrogen bonds: B:R.157, B:Q.177
3HB.4: 4 residues within 4Å:- Chain B: L.20, R.33
- Chain F: L.20, P.22
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.20
- pi-Cation interactions: B:R.33
3HB.7: 12 residues within 4Å:- Chain C: G.14, P.15, R.133
- Chain D: Y.24, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.5
9 PLIP interactions:7 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:Y.147, D:W.149, D:R.157, D:I.191, C:P.15
- Hydrogen bonds: D:Y.24, D:R.157, D:Q.177, C:G.134
3HB.8: 4 residues within 4Å:- Chain B: P.22, I.28
- Chain D: L.20, R.33
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain D- Hydrophobic interactions: B:P.22, B:I.28, D:L.20
- Water bridges: D:L.20
- pi-Cation interactions: D:R.33
3HB.11: 12 residues within 4Å:- Chain E: G.14, P.15, R.133, G.134
- Chain F: Y.24, Y.147, W.149, R.157, H.162, Q.177, I.191
- Ligands: FE.9
9 PLIP interactions:6 interactions with chain F, 3 interactions with chain E- Hydrophobic interactions: F:Y.147, F:W.149, F:R.157, F:I.191, E:P.15
- Hydrogen bonds: F:R.157, F:Q.177, E:G.134
- Salt bridges: E:R.133
3HB.12: 4 residues within 4Å:- Chain D: P.22, I.28
- Chain F: L.20, R.33
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain F- Hydrophobic interactions: D:P.22, D:I.28, F:L.20
- pi-Cation interactions: F:R.33
3HB.15: 12 residues within 4Å:- Chain G: G.14, P.15, R.133
- Chain H: Y.24, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.13
8 PLIP interactions:2 interactions with chain G, 6 interactions with chain H- Hydrophobic interactions: G:P.15, H:Y.147, H:W.149, H:R.157, H:I.191
- Hydrogen bonds: G:G.134, H:R.157, H:Q.177
3HB.16: 3 residues within 4Å:- Chain H: R.33
- Chain L: P.22, I.28
3 PLIP interactions:2 interactions with chain L, 1 interactions with chain H- Hydrophobic interactions: L:P.22, L:I.28
- Water bridges: H:L.20
3HB.19: 11 residues within 4Å:- Chain I: G.14, P.15, R.133
- Chain J: Y.24, Y.147, W.149, R.157, H.162, Q.177, I.191
- Ligands: FE.17
9 PLIP interactions:7 interactions with chain J, 2 interactions with chain I- Hydrophobic interactions: J:Y.147, J:W.149, J:R.157, J:I.191, I:P.15
- Hydrogen bonds: J:Y.24, J:R.157, J:Q.177
- Salt bridges: I:R.133
3HB.20: 4 residues within 4Å:- Chain H: L.20, P.22, I.28
- Chain J: R.33
3 PLIP interactions:2 interactions with chain H, 1 interactions with chain J- Hydrophobic interactions: H:P.22, H:I.28
- pi-Cation interactions: J:R.33
3HB.23: 13 residues within 4Å:- Chain K: G.14, P.15, R.133, G.134
- Chain L: Y.24, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.21
8 PLIP interactions:2 interactions with chain K, 6 interactions with chain L- Hydrophobic interactions: K:P.15, L:Y.147, L:W.149, L:R.157, L:I.191
- Hydrogen bonds: K:G.134, L:R.157, L:Q.177
3HB.24: 5 residues within 4Å:- Chain J: L.20, P.22, I.28
- Chain L: L.20, R.33
4 PLIP interactions:3 interactions with chain J, 1 interactions with chain L- Hydrophobic interactions: J:P.22, J:P.22, J:I.28
- pi-Cation interactions: L:R.33
3HB.27: 11 residues within 4Å:- Chain M: G.14, P.15, R.133
- Chain N: Y.24, Y.147, W.149, R.157, H.162, Q.177, I.191
- Ligands: FE.25
8 PLIP interactions:7 interactions with chain N, 1 interactions with chain M- Hydrophobic interactions: N:Y.147, N:W.149, N:R.157, N:I.191, M:P.15
- Hydrogen bonds: N:Y.24, N:R.157, N:Q.177
3HB.28: 4 residues within 4Å:- Chain N: L.20, R.33
- Chain R: L.20, P.22
2 PLIP interactions:2 interactions with chain N- Hydrophobic interactions: N:L.20
- pi-Cation interactions: N:R.33
3HB.31: 12 residues within 4Å:- Chain O: G.14, P.15, R.133
- Chain P: Y.24, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.29
8 PLIP interactions:6 interactions with chain P, 2 interactions with chain O- Hydrophobic interactions: P:Y.147, P:W.149, P:R.157, P:I.191, O:P.15
- Hydrogen bonds: P:R.157, P:Q.177, O:G.134
3HB.32: 4 residues within 4Å:- Chain N: P.22, I.28
- Chain P: L.20, R.33
5 PLIP interactions:2 interactions with chain N, 3 interactions with chain P- Hydrophobic interactions: N:P.22, N:I.28, P:L.20
- Water bridges: P:L.20
- pi-Cation interactions: P:R.33
3HB.35: 12 residues within 4Å:- Chain Q: G.14, P.15, R.133, G.134
- Chain R: Y.24, Y.147, W.149, R.157, H.162, Q.177, I.191
- Ligands: FE.33
10 PLIP interactions:7 interactions with chain R, 3 interactions with chain Q- Hydrophobic interactions: R:Y.147, R:W.149, R:R.157, R:I.191, Q:P.15
- Hydrogen bonds: R:Y.24, R:R.157, R:Q.177, Q:G.134
- Salt bridges: Q:R.133
3HB.36: 4 residues within 4Å:- Chain P: P.22, I.28
- Chain R: L.20, R.33
4 PLIP interactions:2 interactions with chain P, 2 interactions with chain R- Hydrophobic interactions: P:P.22, P:I.28, R:L.20
- pi-Cation interactions: R:R.33
3HB.39: 12 residues within 4Å:- Chain S: G.14, P.15, R.133
- Chain T: Y.24, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.37
9 PLIP interactions:7 interactions with chain T, 2 interactions with chain S- Hydrophobic interactions: T:Y.147, T:W.149, T:R.157, T:I.191, S:P.15
- Hydrogen bonds: T:Y.24, T:R.157, T:Q.177, S:G.134
3HB.40: 3 residues within 4Å:- Chain T: R.33
- Chain X: P.22, I.28
3 PLIP interactions:1 interactions with chain T, 2 interactions with chain X- Water bridges: T:L.20
- Hydrophobic interactions: X:P.22, X:I.28
3HB.43: 11 residues within 4Å:- Chain U: G.14, P.15, R.133
- Chain V: Y.24, Y.147, W.149, R.157, H.162, Q.177, I.191
- Ligands: FE.41
8 PLIP interactions:6 interactions with chain V, 2 interactions with chain U- Hydrophobic interactions: V:Y.147, V:W.149, V:R.157, V:I.191, U:P.15
- Hydrogen bonds: V:R.157, V:Q.177
- Salt bridges: U:R.133
3HB.44: 4 residues within 4Å:- Chain T: L.20, P.22, I.28
- Chain V: R.33
3 PLIP interactions:2 interactions with chain T, 1 interactions with chain V- Hydrophobic interactions: T:P.22, T:I.28
- pi-Cation interactions: V:R.33
3HB.47: 13 residues within 4Å:- Chain W: G.14, P.15, R.133, G.134
- Chain X: Y.24, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.45
10 PLIP interactions:8 interactions with chain X, 2 interactions with chain W- Hydrophobic interactions: X:Y.147, X:W.149, X:R.157, X:I.191, W:P.15
- Hydrogen bonds: X:Y.24, X:Y.147, X:R.157, X:Q.177, W:G.134
3HB.48: 5 residues within 4Å:- Chain V: L.20, P.22, I.28
- Chain X: L.20, R.33
4 PLIP interactions:3 interactions with chain V, 1 interactions with chain X- Hydrophobic interactions: V:P.22, V:P.22, V:I.28
- pi-Cation interactions: X:R.33
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site. Biochemistry (1997)
- Release Date
- 1998-04-29
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 24 x 3HB: 3-HYDROXYBENZOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site. Biochemistry (1997)
- Release Date
- 1998-04-29
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R