- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.2: 4 residues within 4Å:- Chain B: H.61, C.129, L.130, S.138
No protein-ligand interaction detected (PLIP)BME.5: 3 residues within 4Å:- Chain D: H.61, C.129, S.138
No protein-ligand interaction detected (PLIP)BME.8: 3 residues within 4Å:- Chain F: H.61, C.129, S.138
No protein-ligand interaction detected (PLIP)BME.11: 4 residues within 4Å:- Chain H: H.61, C.129, L.130, S.138
No protein-ligand interaction detected (PLIP)BME.14: 4 residues within 4Å:- Chain J: H.61, C.129, L.130, S.138
No protein-ligand interaction detected (PLIP)BME.17: 4 residues within 4Å:- Chain L: H.61, C.129, L.130, S.138
No protein-ligand interaction detected (PLIP)BME.20: 4 residues within 4Å:- Chain N: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:H.61
BME.23: 3 residues within 4Å:- Chain P: H.61, C.129, S.138
No protein-ligand interaction detected (PLIP)BME.26: 3 residues within 4Å:- Chain R: H.61, C.129, S.138
No protein-ligand interaction detected (PLIP)BME.29: 4 residues within 4Å:- Chain T: H.61, C.129, L.130, S.138
No protein-ligand interaction detected (PLIP)BME.32: 4 residues within 4Å:- Chain V: H.61, C.129, L.130, S.138
No protein-ligand interaction detected (PLIP)BME.35: 4 residues within 4Å:- Chain X: H.61, C.129, L.130, S.138
No protein-ligand interaction detected (PLIP)- 12 x INO: 2-HYDROXYISONICOTINIC ACID N-OXIDE(Non-covalent)
INO.3: 13 residues within 4Å:- Chain A: G.14, P.15, R.133
- Chain B: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.1
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:W.149, B:I.191, A:P.15
- Hydrogen bonds: B:R.157, B:Q.177
INO.6: 13 residues within 4Å:- Chain C: G.14, P.15, R.133
- Chain D: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.4
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:W.149, D:I.191, C:P.15
- Hydrogen bonds: D:Y.24, D:R.157, D:Q.177
INO.9: 14 residues within 4Å:- Chain E: T.12, G.14, P.15, R.133
- Chain F: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.7
5 PLIP interactions:4 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: F:W.149, F:I.191, E:P.15
- Hydrogen bonds: F:R.157, F:Q.177
INO.12: 13 residues within 4Å:- Chain G: T.12, G.14, P.15
- Chain H: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.10
5 PLIP interactions:4 interactions with chain H, 1 interactions with chain G- Hydrophobic interactions: H:W.149, H:I.191, G:P.15
- Hydrogen bonds: H:R.157, H:Q.177
INO.15: 13 residues within 4Å:- Chain I: G.14, P.15, R.133
- Chain J: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.13
6 PLIP interactions:5 interactions with chain J, 1 interactions with chain I- Hydrophobic interactions: J:W.149, J:I.191, I:P.15
- Hydrogen bonds: J:Y.24, J:R.157, J:Q.177
INO.18: 14 residues within 4Å:- Chain K: T.12, G.14, P.15, R.133
- Chain L: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.16
5 PLIP interactions:4 interactions with chain L, 1 interactions with chain K- Hydrophobic interactions: L:W.149, L:I.191, K:P.15
- Hydrogen bonds: L:R.157, L:Q.177
INO.21: 13 residues within 4Å:- Chain M: G.14, P.15, R.133
- Chain N: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.19
6 PLIP interactions:1 interactions with chain M, 5 interactions with chain N- Hydrophobic interactions: M:P.15, N:W.149, N:I.191
- Hydrogen bonds: N:Y.24, N:R.157, N:Q.177
INO.24: 13 residues within 4Å:- Chain O: G.14, P.15, R.133
- Chain P: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.22
5 PLIP interactions:4 interactions with chain P, 1 interactions with chain O- Hydrophobic interactions: P:W.149, P:I.191, O:P.15
- Hydrogen bonds: P:R.157, P:Q.177
INO.27: 14 residues within 4Å:- Chain Q: T.12, G.14, P.15, R.133
- Chain R: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.25
6 PLIP interactions:5 interactions with chain R, 1 interactions with chain Q- Hydrophobic interactions: R:W.149, R:I.191, Q:P.15
- Hydrogen bonds: R:Y.24, R:R.157, R:Q.177
INO.30: 13 residues within 4Å:- Chain S: T.12, G.14, P.15
- Chain T: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.28
6 PLIP interactions:5 interactions with chain T, 1 interactions with chain S- Hydrophobic interactions: T:W.149, T:I.191, S:P.15
- Hydrogen bonds: T:Y.24, T:R.157, T:Q.177
INO.33: 13 residues within 4Å:- Chain U: G.14, P.15, R.133
- Chain V: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.31
5 PLIP interactions:4 interactions with chain V, 1 interactions with chain U- Hydrophobic interactions: V:W.149, V:I.191, U:P.15
- Hydrogen bonds: V:R.157, V:Q.177
INO.36: 14 residues within 4Å:- Chain W: T.12, G.14, P.15, R.133
- Chain X: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.34
6 PLIP interactions:5 interactions with chain X, 1 interactions with chain W- Hydrophobic interactions: X:W.149, X:I.191, W:P.15
- Hydrogen bonds: X:Y.24, X:R.157, X:Q.177
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding. Biochemistry (1997)
- Release Date
- 1998-01-21
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 12 x INO: 2-HYDROXYISONICOTINIC ACID N-OXIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding. Biochemistry (1997)
- Release Date
- 1998-01-21
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R