- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.54 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 6 residues within 4Å:- Chain B: P.15, R.133, G.134
- Chain C: Y.24, T.26, W.149
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: B:G.134, C:Y.24, C:T.26
- Water bridges: B:R.133, B:R.133, C:T.26
- Salt bridges: B:R.133
SO4.5: 5 residues within 4Å:- Chain D: P.15, R.133
- Chain E: Y.24, T.26, W.149
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain D- Hydrogen bonds: E:T.26, E:T.26, D:G.134
- Salt bridges: D:R.133
SO4.7: 5 residues within 4Å:- Chain A: R.133, G.134
- Chain F: Y.24, T.26, W.149
5 PLIP interactions:3 interactions with chain F, 2 interactions with chain A- Hydrogen bonds: F:Y.24, F:T.26, A:G.134
- Water bridges: F:Y.24
- Salt bridges: A:R.133
SO4.10: 6 residues within 4Å:- Chain H: P.15, R.133, G.134
- Chain I: Y.24, T.26, W.149
7 PLIP interactions:3 interactions with chain I, 4 interactions with chain H- Hydrogen bonds: I:Y.24, I:T.26, H:G.134
- Water bridges: I:T.26, H:R.133, H:R.133
- Salt bridges: H:R.133
SO4.13: 5 residues within 4Å:- Chain J: P.15, R.133
- Chain K: Y.24, T.26, W.149
4 PLIP interactions:2 interactions with chain K, 2 interactions with chain J- Hydrogen bonds: K:T.26, K:T.26, J:G.134
- Salt bridges: J:R.133
SO4.15: 5 residues within 4Å:- Chain G: R.133, G.134
- Chain L: Y.24, T.26, W.149
5 PLIP interactions:2 interactions with chain G, 3 interactions with chain L- Hydrogen bonds: G:G.134, L:Y.24, L:T.26
- Salt bridges: G:R.133
- Water bridges: L:Y.24
SO4.18: 6 residues within 4Å:- Chain N: P.15, R.133, G.134
- Chain O: Y.24, T.26, W.149
6 PLIP interactions:4 interactions with chain N, 2 interactions with chain O- Hydrogen bonds: N:G.134, O:T.26, O:T.26
- Water bridges: N:R.133, N:R.133
- Salt bridges: N:R.133
SO4.21: 5 residues within 4Å:- Chain P: P.15, R.133
- Chain Q: Y.24, T.26, W.149
5 PLIP interactions:2 interactions with chain P, 3 interactions with chain Q- Hydrogen bonds: P:G.134, Q:Y.24, Q:T.26, Q:T.26
- Salt bridges: P:R.133
SO4.23: 5 residues within 4Å:- Chain M: R.133, G.134
- Chain R: Y.24, T.26, W.149
4 PLIP interactions:2 interactions with chain R, 2 interactions with chain M- Water bridges: R:Y.24, R:T.26
- Hydrogen bonds: M:G.134
- Salt bridges: M:R.133
SO4.26: 6 residues within 4Å:- Chain T: P.15, R.133, G.134
- Chain U: Y.24, T.26, W.149
6 PLIP interactions:4 interactions with chain T, 2 interactions with chain U- Hydrogen bonds: T:G.134, U:T.26, U:T.26
- Water bridges: T:R.133, T:R.133
- Salt bridges: T:R.133
SO4.29: 5 residues within 4Å:- Chain V: P.15, R.133
- Chain W: Y.24, T.26, W.149
5 PLIP interactions:2 interactions with chain V, 3 interactions with chain W- Hydrogen bonds: V:G.134, W:Y.24, W:T.26, W:T.26
- Salt bridges: V:R.133
SO4.31: 5 residues within 4Å:- Chain S: R.133, G.134
- Chain X: Y.24, T.26, W.149
4 PLIP interactions:2 interactions with chain X, 2 interactions with chain S- Water bridges: X:Y.24, X:T.26
- Hydrogen bonds: S:G.134
- Salt bridges: S:R.133
- 4 x BCT: BICARBONATE ION(Non-functional Binders)
BCT.3: 4 residues within 4Å:- Chain D: N.37, R.38, T.105, H.107
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:N.37, D:T.105
- Water bridges: D:W.36, D:R.38
BCT.11: 4 residues within 4Å:- Chain J: N.37, R.38, T.105, H.107
4 PLIP interactions:4 interactions with chain J- Hydrogen bonds: J:N.37, J:T.105
- Water bridges: J:W.36, J:R.38
BCT.19: 4 residues within 4Å:- Chain P: N.37, R.38, T.105, H.107
6 PLIP interactions:6 interactions with chain P- Hydrogen bonds: P:N.37, P:R.38, P:T.105, P:T.105
- Water bridges: P:W.36, P:R.38
BCT.27: 4 residues within 4Å:- Chain V: N.37, R.38, T.105, H.107
6 PLIP interactions:6 interactions with chain V- Hydrogen bonds: V:N.37, V:R.38, V:T.105, V:T.105
- Water bridges: V:W.36, V:R.38
- 4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.6: 5 residues within 4Å:- Chain E: Q.203, I.205, R.222, F.223, D.224
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:Q.203
BME.14: 5 residues within 4Å:- Chain K: Q.203, I.205, R.222, F.223, D.224
1 PLIP interactions:1 interactions with chain K- Hydrogen bonds: K:Q.203
BME.22: 5 residues within 4Å:- Chain Q: Q.203, I.205, R.222, F.223, D.224
1 PLIP interactions:1 interactions with chain Q- Hydrogen bonds: Q:Q.203
BME.30: 5 residues within 4Å:- Chain W: Q.203, I.205, R.222, F.223, D.224
1 PLIP interactions:1 interactions with chain W- Hydrogen bonds: W:Q.203
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Knoot, C.J. et al., Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2014-12-31
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABDGHJMNPSTV
Protocatechuate 3,4-dioxygenase beta chain: CEFIKLOQRUWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
ED
CG
AH
EJ
CM
AN
EP
CS
AT
EV
CC
FE
DF
BI
FK
DL
BO
FQ
DR
BU
FW
DX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.54 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 4 x BCT: BICARBONATE ION(Non-functional Binders)
- 4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Knoot, C.J. et al., Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2014-12-31
- Peptides
- Protocatechuate 3,4-dioxygenase alpha chain: ABDGHJMNPSTV
Protocatechuate 3,4-dioxygenase beta chain: CEFIKLOQRUWX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
ED
CG
AH
EJ
CM
AN
EP
CS
AT
EV
CC
FE
DF
BI
FK
DL
BO
FQ
DR
BU
FW
DX
B